Parental gene:

PGGT1B, ENSCJAG00000016700

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:2:91546597..91603860(+)


>ENSCJAG00000016700
ATGGCGGCCACTGAGGACGAGAAGCTAACGGGTAGCGGTGAGGGAGAGCGGCTGGATTTCTTGCGGGATCGGCACGTGCG
GTTTTTCCAGCGCTGCCTCCAGGTTTTGCCGGAGCGCTATTCTTCACTCGAGACAAGCAGGTTGACAATTGCATTTTTTG
CACTCTCCGGGCTGGATATGTTGGATTCCTTAGATGTGGTGAACAAAGATGATATAATAGAGTGGATTTACTCCCTGCAG
GTCCTTCCCACAGAAGACAGATCAAATCTAAATCGCTGTGGTTTCCGAGGCTCTTCATACCTGGGTATTCCATTCAATCC
ATCAAAGGCTCCTGGAACAGCTCATCCTTATGATAGTGGCCACATTGCAATGACCTACACTGGCCTTTCATGCTTAGTTA
TTCTTGGAGACGACTTAAGCAGAGTAAATAAAGAAGCTTGCTTAGCAGGCTTGAGAGCCCTTCAGCTGGAAGACGGGAGT
TTCTGTGCAGTACCCGAAGGCAGTGAAAATGACATGCGATTTGTGTACTGTGCTTCCTGTATTTGCTATATGCTCAACAA
CTGGTCAGGCATGGATATGAAAAAAGCCATCACCTATATTAGAAGAAGTATGTCCTATGACAATGGACTGGCACAGGGAG
CTGGACTTGAATCTCATGGAGGATCTACTTTTTGTGGCATTGCCTCACTATGTCTGATGGGTAAACTAGAAGAAGTTTTT
TCAGAAAAAGAATTGAACAGGATAAAGAGGTGGTGTATAATGAGGCAACAAAATGGTTATCATGGAAGACCTAATAAGCC
TGTAGACACCTGTTACTCTTTTTGGGTGGGAGCAACTCTAAAGCTTCTAAAAATTTTCCAATATACTAACTTTGAGAAAA
ATAGAAATTACATCTTATCAACTCAAGATCGCCTCGTAGGAGGATTTGCCAAGTGGCCAGACAGTCATCCAGATGCTTTG
CATGCATACTTTGGGATCTGTGGCCTGTCACTAATGGAGGAAAGTGGAATTTGTAAAGTTCATCCTGCTCTGAATGGAAG
CACACGGACTTCTGAACGCCTTCTAGATCTCCATCAAAGCTGGAAAACCAAGGACTCTAAACAATGCTCAGAGAATGTAC
ATATCTCCACGTGA

Library Parental gene expression (RPM)
SRP051959_spleen 21 .76 RPM
SRP051959_skeletal_muscle 9 .46 RPM
SRP051959_lymph_node 20 .50 RPM
SRP051959_lung 19 .23 RPM
SRP051959_liver 11 .70 RPM
SRP051959_kidney 21 .03 RPM
SRP051959_heart 13 .73 RPM
SRP051959_colon 17 .42 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000002443 ortholog_one2one 1 retrogene
retro_cpor_1344,
Homo sapiens ENSG00000164219 ortholog_one2one 2 retrogenes
retro_hsap_675, retro_hsap_698,
Loxodonta africana ENSLAFG00000003752 ortholog_one2one 1 retrogene
retro_lafr_668,
Pongo abelii ENSPPYG00000015694 ortholog_one2one 3 retrogenes
retro_pabe_527, retro_pabe_545, retro_pabe_640,
Pan troglodytes ENSPTRG00000017146 ortholog_one2one 2 retrogenes
retro_ptro_444, retro_ptro_487,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1058 92.92 59.95
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Download FASTA sequences of all ENSCJAG00000016700 retrocopies