Parental gene:

YBX2, ENSCJAG00000016581

Aliases:None
Description:Y box binding protein 2 [Source:HGNC Symbol;Acc:17948]
Organism:Marmoset (Callithrix jacchus)
Coordinates:5:74578173..74584140(+)


>ENSCJAG00000016581
ATGAGCGAGGTGGACGCGGCAGCGGTGGCGACAGCGGCCCCCGCTGCGACGGTGCCCGCGACGGCGGCAGGGGTGGTAGC
GGTGGTAGTACCGGTGCCCGCGGGGGAGCCGCAGAAAGCAGGCGGCGGGGCCGGCGGCGGCGGCAGCGGCGGCGGCGGGG
GCGGAGCCGCCTCGGGCCCCGCTGCTGGGACCCCCTCGGCGCCGGGCCCCCGCACCCCTGGCAACCCGGCGACCGCGGCC
TCGGGAACCCCCACGCCCCCGGCACGGAGTCAGGCGGACAAGCCGGTGCTGGCAATCCGAGTCCTGGGCACTGTCAAATG
GTTCAACGTCCGGAATGGTTACGGATTCATCAACAGGAATGACACCAAGGAAGATGTCTTTGTTCACCAGACAGCTATTA
AAAGAAACAACCCCAGGAAGTTTCTGCGCAGCGTTGGAGATGGGGAGACTGTGGAATTTGATGTCGTGGAAGGAGAGAAG
GGTGCAGAAGCCGCGAATGTAACTGGGCCTGGGGGGGTGCCTGTGAAGGGCAGCCGTTATGCCCCCAACCGACGTAGGTT
TCGCCGATTCATCCCTCGGCCGCGCCCAGCTGCCCCACCACCCAGGGTTGCAGAGGTTCCCTCAGTGGGGACAGAACCTG
GCAGCGAAGGGGAGCAGGCTGAAGACTCTGGGCAGCGGCCCAGACGACGGCGCCCACCACCCTTCTACCGAAGGCGGTTC
GTGCGAGGCCCTCGGCCCCTTAACCAGCAGCAGCCTATAGAGGGCACTGATGAGGTAGAACCCAAAGAGACAGCTCCACT
GGAGGGGCACCAACACCAGGGAGATGAGCGCGTCCCCCCGCCCCGGTTCCGGCCCAGGTACCGAAGGCCTTTCCGCCCCA
GGCCACCCCAGCAGCCTACCACGGAAGGTGGGGATGGTAAGACCAAGCCCAGTCAAGGTTCTGCAGATGGTTCCCGACCT
GAGCCTCAGCGGCCACGAAACCGCCCATATTTCCAGCGTAGACGGCAGCAGCCTCCTGGTCCCTGGCAGCCCACAGCCCC
TGAGACCTCAGGCCCTACCAACAGTGGGGACCTCACCTCTACCATCCTGGAGTGA

Library Parental gene expression (RPM)
SRP051959_spleen 0 .17 RPM
SRP051959_skeletal_muscle 1 .75 RPM
SRP051959_lymph_node 0 .21 RPM
SRP051959_lung 0 .23 RPM
SRP051959_liver 1 .10 RPM
SRP051959_kidney 0 .51 RPM
SRP051959_heart 1 .28 RPM
SRP051959_colon 2 .11 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000003155 within_species_paralog 6 retrogenes
retro_cjac_1261, retro_cjac_1701, retro_cjac_2718, retro_cjac_3156, retro_cjac_4172, retro_cjac_817,
Homo sapiens ENSG00000006047 ortholog_one2one 1 retrogene
retro_hsap_637,
Macaca mulatta ENSMMUG00000022712 ortholog_one2one 1 retrogene
retro_mmul_2237,
Nomascus leucogenys ENSNLEG00000008063 ortholog_one2one 1 retrogene
retro_nleu_1954,
Oryctolagus cuniculus ENSOCUG00000015064 ortholog_one2one 1 retrogene
retro_ocun_1762,
Pan troglodytes ENSPTRG00000008673 ortholog_one2one 3 retrogenes
retro_ptro_1264, retro_ptro_464, retro_ptro_50,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1473 82.38 71.43
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Download FASTA sequences of all ENSCJAG00000016581 retrocopies