Parental gene:

ZMAT2, ENSCJAG00000016231

Aliases:None
Description:zinc finger, matrin-type 2 [Source:HGNC Symbol;Acc:26433]
Organism:Marmoset (Callithrix jacchus)
Coordinates:2:37610423..37617370(+)


>ENSCJAG00000016231
ATGGCGTCGGGCAGCGGGACAAAAAACTTGGACTTTCGCCGAAAGTGGGACAAAGATGAGTACGAGAAGCTCGCCGAGAA
GAGGCTCACGGAAGAGAGAGAAAAGAAGGATGGAAAACCAGTGCAGCCTGTCAAGCGAGAGCTTCTACGGCATAGGGACT
ACAAGGTGGACTTGGAATCCAAACTTGGGAAGACAATTGTTATTACCAAGACCACACCTCAATCTGAGATGGGAGGATAT
TATTGCAATGTCTGTGACTGTGTGGTAAAGGACTCCATCAACTTTCTGGATCACATTAATGGAAAGAAACATCAGAGAAA
CCTGGGCATGTCTATGCGTGTGGAACGTTCCACCCTGGATCAGGTGAAGAAACGTTTTGAGGTCAACAAGAAGAAGATGG
AAGAAAAGCAGAAGGATTATGATTTTGAGGAAAGGATGAAGGAGCTCAGAGAAGAGGAGGAAAAGGCCAAAGCATACAAG
AAAGAGAAACAGAAGGAGAAGAAAAGGAGGGCTGAGGAGGACTTGACATTTGAGGAGGATGATGAGATGGCAGCTGTGAT
GGGCTTCTCTGGCTTTGGTTCCACCAAGAAGAGTTACTGA

Library Parental gene expression (RPM)
SRP051959_spleen 20 .82 RPM
SRP051959_skeletal_muscle 22 .38 RPM
SRP051959_lymph_node 18 .20 RPM
SRP051959_lung 20 .37 RPM
SRP051959_liver 15 .16 RPM
SRP051959_kidney 19 .77 RPM
SRP051959_heart 16 .63 RPM
SRP051959_colon 10 .38 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000005907 ortholog_one2one 1 retrogene
retro_cfam_822,
Dipodomys ordii ENSDORG00000014559 ortholog_one2one 8 retrogenes
retro_dord_123, retro_dord_127, retro_dord_129, retro_dord_131, retro_dord_133, retro_dord_135, retro_dord_136, retro_dord_138,
Echinops telfairi ENSETEG00000005406 ortholog_one2many 2 retrogenes
retro_etel_156, retro_etel_882,
Ficedula albicollis ENSFALG00000008988 ortholog_one2many 1 retrogene
retro_falb_9,
Myotis lucifugus ENSMLUG00000017525 ortholog_one2one 2 retrogenes
retro_mluc_2281, retro_mluc_2309,
Monodelphis domestica ENSMODG00000011269 ortholog_one2many 1 retrogene
retro_mdom_1209,
Pteropus vampyrus ENSPVAG00000009717 ortholog_one2one 1 retrogene
retro_pvam_827,
Tursiops truncatus ENSTTRG00000001777 ortholog_one2one 4 retrogenes
retro_ttru_1889, retro_ttru_340, retro_ttru_721, retro_ttru_766,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1137 96.30 67.84
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2. retro_cjac_1472 98.00 100.00
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3. retro_cjac_4007 90.09 55.78
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Download FASTA sequences of all ENSCJAG00000016231 retrocopies