Parental gene: | DCAF13, ENSCJAG00000016181 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 16:91079728..91107910(-) |
>ENSCJAG00000016181
ATGAAGGTGAAGATGCTGAGTCGGAATCCGGACAATTATGTCCGCGAAACCAAGTTTGACTTACAGAGAGTTCCAAGAAA
CTATGATCCTGCCTTACATCCTTTTGAGGTCCCACGAGAATATGTAAGAGCTTTAAACGCTACCAAACTGGAACGGGTAT
TTGCAAAACCATTCCTTGCTTCGCTGGATGGTCACCGAGATGGAGTCAATTGCTTGGCAAAGCATCCAAAGAACCTGGCT
ACTGTCCTTTCTGGGGCATGTGATGGAGAGGTTAGAATTTGGAACCTGACTCAACGGAAATGTATCCGTACAATACAAGC
ACATGAAGGCTTTGTACGAGGAATATGTACTCGCTTTTGTGGGACTTCTTTTTTCACTGTTGGTGATGACAAAACTGTGA
AGCAGTGGAAAATGGATGGGCCAGGCTATGGAGAGGAGGAAGAGCCATTACATACAATATTAGGAAAGACAGTGTATACT
GGGATTGATCATCACTGGAAAGAAGCTGTTTTTGCCACATGTGGACAGCAAGTAGACATTTGGGATGAACAAAGAACGAA
TCCTATATGTTCAATGACCTGGGGATTTGACAGTATAAGTAGTGTTAAATTTAACCCAATTGAGACATTTCTCTTGGGAA
GTTGTGCATCTGACAGGAATATAGTATTATATGATATGAGGCAAGCTACTCCTTTGAAAAAGGTTATCTTAGACATGAGA
ACAAATACAATTTGTTGGAACCCTATGGAAGCTTTCATTTTTACAGCAGCAAATGAAGATTATAATTTATATACTTTTGA
TATGCGTGCACTGGACACTCCTGTAATGGTCCACATGGATCATGTATCTGCAGTCCTTGATGTGGATTACTCTCCCACTG
GGAAAGAGTTTGTGTCTGCTAGTTTTGATAAATCTATTCGAATCTTTCCTATAGACAAAAGTCGAAGCAGGGAGGTGTAT
CACACAAAGCGAATGCAACATGTTATCTGTGTAAAATGGACTTCTGACAGCAAGTATATTATGTGTGGATCTGATGAAAT
GAACATTCGCCTATGGAAAGCTAATGCTTCTGAAAAATTGGGTGTGCTTACATCACGAGAAAAAGCAGCCAAGGATTATA
ACCAGAAATTGAAGGAAAAATTTCAGCATCATCCTCATATAAAACGTATAGCTCGTCATCGACATCTACCAAAATCTATC
TACAGCCAAATTCAGGAACAGCGCATCATGAAAGAAGCTCGTCGACGAAAGGAAATGAATCGTATTAAACACAGCAAGCC
TGGATCTGTGCCAGTTGTGTCAGAGAAGAAGAAACACGTAGTGGCAGTTGTAAAATAA
ATGAAGGTGAAGATGCTGAGTCGGAATCCGGACAATTATGTCCGCGAAACCAAGTTTGACTTACAGAGAGTTCCAAGAAA
CTATGATCCTGCCTTACATCCTTTTGAGGTCCCACGAGAATATGTAAGAGCTTTAAACGCTACCAAACTGGAACGGGTAT
TTGCAAAACCATTCCTTGCTTCGCTGGATGGTCACCGAGATGGAGTCAATTGCTTGGCAAAGCATCCAAAGAACCTGGCT
ACTGTCCTTTCTGGGGCATGTGATGGAGAGGTTAGAATTTGGAACCTGACTCAACGGAAATGTATCCGTACAATACAAGC
ACATGAAGGCTTTGTACGAGGAATATGTACTCGCTTTTGTGGGACTTCTTTTTTCACTGTTGGTGATGACAAAACTGTGA
AGCAGTGGAAAATGGATGGGCCAGGCTATGGAGAGGAGGAAGAGCCATTACATACAATATTAGGAAAGACAGTGTATACT
GGGATTGATCATCACTGGAAAGAAGCTGTTTTTGCCACATGTGGACAGCAAGTAGACATTTGGGATGAACAAAGAACGAA
TCCTATATGTTCAATGACCTGGGGATTTGACAGTATAAGTAGTGTTAAATTTAACCCAATTGAGACATTTCTCTTGGGAA
GTTGTGCATCTGACAGGAATATAGTATTATATGATATGAGGCAAGCTACTCCTTTGAAAAAGGTTATCTTAGACATGAGA
ACAAATACAATTTGTTGGAACCCTATGGAAGCTTTCATTTTTACAGCAGCAAATGAAGATTATAATTTATATACTTTTGA
TATGCGTGCACTGGACACTCCTGTAATGGTCCACATGGATCATGTATCTGCAGTCCTTGATGTGGATTACTCTCCCACTG
GGAAAGAGTTTGTGTCTGCTAGTTTTGATAAATCTATTCGAATCTTTCCTATAGACAAAAGTCGAAGCAGGGAGGTGTAT
CACACAAAGCGAATGCAACATGTTATCTGTGTAAAATGGACTTCTGACAGCAAGTATATTATGTGTGGATCTGATGAAAT
GAACATTCGCCTATGGAAAGCTAATGCTTCTGAAAAATTGGGTGTGCTTACATCACGAGAAAAAGCAGCCAAGGATTATA
ACCAGAAATTGAAGGAAAAATTTCAGCATCATCCTCATATAAAACGTATAGCTCGTCATCGACATCTACCAAAATCTATC
TACAGCCAAATTCAGGAACAGCGCATCATGAAAGAAGCTCGTCGACGAAAGGAAATGAATCGTATTAAACACAGCAAGCC
TGGATCTGTGCCAGTTGTGTCAGAGAAGAAGAAACACGTAGTGGCAGTTGTAAAATAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 16 .41 RPM |
| SRP051959_skeletal_muscle | 6 .73 RPM |
| SRP051959_lymph_node | 14 .36 RPM |
| SRP051959_lung | 11 .96 RPM |
| SRP051959_liver | 10 .94 RPM |
| SRP051959_kidney | 12 .18 RPM |
| SRP051959_heart | 8 .31 RPM |
| SRP051959_colon | 12 .74 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000001595 | ortholog_one2one | 3 retrogenes | |
| Canis familiaris | ENSCAFG00000000663 | ortholog_one2one | 3 retrogenes | |
| Felis catus | ENSFCAG00000027256 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000164934 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000015124 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000007375 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000003791 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000002277 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000018809 | ortholog_one2one | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000020493 | ortholog_one2one | 1 retrogene | |
| Sarcophilus harrisii | ENSSHAG00000006588 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_612 | 86.38 | 67.64 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_3083 | 83.33 | 80.90 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000016181 retrocopies