Parental gene:

ENSCJAG00000015250

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:4:35309489..35317687(-)


>ENSCJAG00000015250
ATGTTGATGCCTAAGAAGAACCGGATTGCCATTTATGAGCTCCTTTTTAAGGAGGGAGTCATGGTGGCCAAGAAGGATGT
CCACATGCCTAAGCACCCAGAGCTGGCGGACAAGAACGTGCCCAACCTTCATGTCATGAAGGCCATGCAGTCTCTCAAAT
CCCGAGGCTACGTGAAGGAACAGTTTGCCTGGAGACATTTCTACTGGTACCTTACCAATGAGGGTATCCAGTATCTCCGT
GATTACCTCCATCTGCCCCCAGAGATCGTGCCTGCCACCCTACGCCGCAGCCGTCCAGAGACAGGCAGGCCTCGGCCTAA
AGGTCTGGAAGGTGAGCGACCTGCAAGACTGACAAGAGGGGAAGCTGACAGAGATACCTACAGACGGAGTGCTGTGCCAC
CTGGTGCTGACAAGAAAGCCGAGGCGGGGGCTGGGTCAGCAACCGAATTCCAGTTTAGAGGCGGATTTGGTCGTGGACGT
GGTCAGCCACCTCAGTAA

Library Parental gene expression (RPM)
SRP051959_spleen 119 .41 RPM
SRP051959_skeletal_muscle 77 .24 RPM
SRP051959_lymph_node 160 .18 RPM
SRP051959_lung 93 .23 RPM
SRP051959_liver 90 .74 RPM
SRP051959_kidney 69 .20 RPM
SRP051959_heart 67 .56 RPM
SRP051959_colon 78 .79 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000001047 possible_ortholog 4 retrogenes
retro_amel_1408, retro_amel_1706, retro_amel_446, retro_amel_890,
Canis familiaris ENSCAFG00000001214 possible_ortholog 2 retrogenes
retro_cfam_1, retro_cfam_92,
Cavia porcellus ENSCPOG00000008613 ortholog_one2one 2 retrogenes
retro_cpor_1245, retro_cpor_345,
Dasypus novemcinctus ENSDNOG00000011670 possible_ortholog 2 retrogenes
retro_dnov_2303, retro_dnov_2558,
Dipodomys ordii ENSDORG00000012060 possible_ortholog 6 retrogenes
retro_dord_225, retro_dord_494, retro_dord_641, retro_dord_73, retro_dord_74, retro_dord_767,
Equus caballus ENSECAG00000006430 possible_ortholog 1 retrogene
retro_ecab_198,
Felis catus ENSFCAG00000015355 possible_ortholog 3 retrogenes
retro_fcat_1443, retro_fcat_1681, retro_fcat_1757,
Homo sapiens ENSG00000124614 possible_ortholog 24 retrogenes
retro_hsap_1509, retro_hsap_1628, retro_hsap_1630, retro_hsap_1657, retro_hsap_1923, retro_hsap_2003, retro_hsap_2113, retro_hsap_229, retro_hsap_2415, retro_hsap_2573, retro_hsap_2574, retro_hsap_2830, retro_hsap_289, retro_hsap_3007, retro_hsap_3170, retro_hsap_3243, retro_hsap_3436, retro_hsap_3454, retro_hsap_3720, retro_hsap_4114, retro_hsap_4190, retro_hsap_460, retro_hsap_869, retro_hsap_992,
Latimeria chalumnae ENSLACG00000017219 ortholog_one2many 1 retrogene
retro_lcha_26,
Loxodonta africana ENSLAFG00000008539 ortholog_one2many 1 retrogene
retro_lafr_756,
Macaca mulatta ENSMMUG00000000267 ortholog_one2many 2 retrogenes
retro_mmul_332, retro_mmul_555,
Monodelphis domestica ENSMODG00000013929 ortholog_one2many 2 retrogenes
retro_mdom_1889, retro_mdom_437,
Mustela putorius furo ENSMPUG00000003117 possible_ortholog 3 retrogenes
retro_mputfur_1347, retro_mputfur_1533, retro_mputfur_1579,
Mus musculus ENSMUSG00000052146 ortholog_one2many 9 retrogenes
retro_mmus_1376, retro_mmus_1500, retro_mmus_1831, retro_mmus_2431, retro_mmus_2551, retro_mmus_2708, retro_mmus_3651, retro_mmus_5, retro_mmus_858,
Nomascus leucogenys ENSNLEG00000008336 possible_ortholog 24 retrogenes
retro_nleu_1064, retro_nleu_1206, retro_nleu_1217, retro_nleu_1366, retro_nleu_1463, retro_nleu_1496, retro_nleu_165, retro_nleu_1694, retro_nleu_1748, retro_nleu_1969, retro_nleu_2120, retro_nleu_2452, retro_nleu_2678, retro_nleu_2791, retro_nleu_2833, retro_nleu_2834, retro_nleu_2950, retro_nleu_2955, retro_nleu_3021, retro_nleu_3047, retro_nleu_3052, retro_nleu_579, retro_nleu_850, retro_nleu_882,
Oryctolagus cuniculus ENSOCUG00000011373 possible_ortholog 2 retrogenes
retro_ocun_250, retro_ocun_874,
Otolemur garnettii ENSOGAG00000001365 possible_ortholog 5 retrogenes
retro_ogar_2166, retro_ogar_2314, retro_ogar_2553, retro_ogar_415, retro_ogar_873,
Ochotona princeps ENSOPRG00000002693 possible_ortholog 2 retrogenes
retro_opri_297, retro_opri_800,
Procavia capensis ENSPCAG00000012795 possible_ortholog 1 retrogene
retro_pcap_309,
Pongo abelii ENSPPYG00000016516 possible_ortholog 2 retrogenes
retro_pabe_2319, retro_pabe_97,
Pan troglodytes ENSPTRG00000018063 possible_ortholog 26 retrogenes
retro_ptro_1021, retro_ptro_1090, retro_ptro_1092, retro_ptro_1126, retro_ptro_1160, retro_ptro_1287, retro_ptro_1335, retro_ptro_1391, retro_ptro_1497, retro_ptro_1502, retro_ptro_1503, retro_ptro_1788, retro_ptro_1918, retro_ptro_199, retro_ptro_2192, retro_ptro_2330, retro_ptro_2342, retro_ptro_238, retro_ptro_2519, retro_ptro_2793, retro_ptro_2797, retro_ptro_2919, retro_ptro_3051, retro_ptro_3078, retro_ptro_347, retro_ptro_603,
Rattus norvegicus ENSRNOG00000000490 ortholog_one2many 4 retrogenes
retro_rnor_169, retro_rnor_224, retro_rnor_359, retro_rnor_74,
Sarcophilus harrisii ENSSHAG00000000731 ortholog_one2many 3 retrogenes
retro_shar_243, retro_shar_334, retro_shar_724,
Ictidomys tridecemlineatus ENSSTOG00000013486 possible_ortholog 5 retrogenes
retro_itri_1448, retro_itri_1515, retro_itri_230, retro_itri_787, retro_itri_963,
Tupaia belangeri ENSTBEG00000001492 possible_ortholog 16 retrogenes
retro_tbel_1302, retro_tbel_175, retro_tbel_1775, retro_tbel_2039, retro_tbel_2061, retro_tbel_2062, retro_tbel_2766, retro_tbel_2814, retro_tbel_314, retro_tbel_3359, retro_tbel_483, retro_tbel_522, retro_tbel_667, retro_tbel_980, retro_tbel_981, retro_tbel_986,
Tursiops truncatus ENSTTRG00000015064 possible_ortholog 2 retrogenes
retro_ttru_1089, retro_ttru_1211,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_63 100.00 100.00
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2. retro_cjac_215 98.18 100.00
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3. retro_cjac_296 99.39 100.00
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4. retro_cjac_325 95.76 100.00
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Download FASTA sequences of all ENSCJAG00000015250 retrocopies