Parental gene:

ENSCJAG00000014853

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:5:88960802..89094255(-)


>ENSCJAG00000014853
ATGACTGACTCCAAGTATTTCACAACCAATAAAAAAGGAGAAATATTTGAACTAAAAGCTGAACTCAACAATGAAAAGAA
AGAAAAGAGAAAGGAGGCTGTGAAGAAAGTGATTGCTGCTATGACTGTGGGGAAGGATGTTAGCTCTCTCTTTCCAGACG
TAGTCAACTGTATGCAGACCGACAATCTGGAACTGAAGAAGCTTGTGTATCTCTACTTGATGAACTATGCCAAGAGTCAG
CCAGACATGGCCATTATGGCTGTAAACAGCTTTGTGAAGGACTGTGAAGATCCTAATCCTTTGATTCGAGCCTTGGCAGT
CAGAACCATGGGGTGCATCCGGGTAGACAAAATTACAGAATATCTCTGTGAGCCCCTCCGCAAGTGCTTGAAGGATGAGG
ATCCATATGTTCGGAAAACAGCAGCAGTCTGCGTGGCAAAACTCCATGATATCAACGCCCAAATGGTGGAAGATCAGGGA
TTTCTGGATTCTCTACGGGATCTCATAGCAGATTCAAATCCAATGGTGGTGGCTAATGCTGTAGCAGCATTATCTGAAAT
CAGTGAGTCTCACCCAAACAGCAACTTACTCGATCTGAACCCACAGAACATTAATAAGCTGCTAACAGCCCTCAACGAGT
GCACTGAATGGGGCCAGATTTTCATCCTGGACTGTCTGTCTAATTATAACCCTAAAGATGATCGGGAGGCTCAGAGTATC
TGTGAACGGGTAACTCCCCGGCTATCCCATGCCAACTCAGCAGTGGTGCTTTCAGCGGTAAAAGTCCTAATGAAGTTTCT
AGAATTGTTACCTAAGGATTCTGACTACTACAATATGCTGCTGAAGAAGTTAGCCCCTCCACTTGTCACTTTGCTTTCTG
GGGAGCCAGAAGTGCAGTACGTCGCCCTAAGGAATATCAACTTAATTGTCCAGAAAAGGCCTGAAATCTTGAAGCAGGAA
ATCAAAGTCTTCTTTGTGAAGTACAATGATCCCATCTATGTTAAACTAGAGAAGTTGGACATCATGATTCGTTTGGCATC
TCAAGCCAACATTGCTCAGGTTCTGGCAGAACTGAAGGAATATGCCACAGAGGTAGATGTTGACTTTGTTCGAAAAGCTG
TGCGGGCCATTGGACGGTGTGCCATCAAGGTGGAGCAATCTGCAGAGCGCTGTGTAAGCACATTGCTTGATCTAATCCAG
ACCAAAGTGAATTATGTGGTCCAAGAAGCGATTGTTGTCATCAGGGACATCTTCCGCAAATACCCCAACAAGTATGAAAG
TATCATTGCCACTCTATGTGAGAACTTAGACTCACTAGATGAGCCAGATGCTCGAGCAGCTATGATTTGGATTGTGGGAG
AATATGCTGAAAGAATTGACAATGCAGATGAGTTACTAGAAAGCTTCCTGGAGGGTTTTCACGATGAAAGCACCCAGGTG
CAGCTCACTCTGCTTACTGCCATAGTGAAGCTGTTTCTCAAGAAACCATCAGAAACACAGGAGCTAGTCCAGCAGGTCTT
GAGTTTGGCAACACAGGATTCTGATAATCCTGACCTTCGAGACCGGGGCTATATTTATTGGCGTCTTCTCTCAACTGACC
CTGTCACAGCTAAAGAAGTAGTCTTGTCTGAAAAGCCACTGATCTCTGAGGAGACAGACCTTATTGAGCCAACTCTGCTG
GATGAGCTAATCTGCCACATTGGTTCTTTGGCCTCTGTGTATCACAAGCCTCCCAATGCTTTTGTGGAAGGAAGTCATGG
AATCCATCGTAAACACTTGCCAATTCATCATGGGAGCACTGATGCAGGTGACAGCCCTGTTGGCACCACCACTGCAACGA
ACCTGGAACAGCCTCAGGTTATCCCCTCTCAAGGTGATCTTCTAGGGGATCTTTTAAACCTTGACCTTGGTCCCCCAGTC
AATGTGCCACAGGTGTCTTCCATGCAGATGGGAGCAGTGGATCTCCTAGGAGGAGGACTAGATAGTCTGCTTGGCAGTGA
CCTTGGCGGGGGCATTGGAGGAAGTCCGGCAGTAGGACAATCCTTTATCCCATCATCAGTGCCTGCAACCTTTGCTCCTT
CACCTACACCTGCTGTCGTCAGCAGTGGACTGAATGACCTGTTTGAACTCTCTACAGGGATAGGCATGGCACCCGGTGGA
TATGTGGCTCCTAAGGCTGTCTGGCTACCTGCAGTAAAGGCTAAAGGCTTGGAGATTTCAGGAACATTTACTCACCGCCA
AGGGCACATCTATATGGAAATGAACTTCACCAATAAAGCTCTGCAGCATATGACAGATTTTGCAATCCAGTTTAACAAAA
ATAGCTTTGGTGTCATCCCCAGCACTCCTCTGGCCATCCATACACCACTCATGCCAAACCAGAGCATTGATGTCTCCCTG
CCTCTCAACACCTTGGGCCCAGTCATGAAGATGGAACCTCTGAATAACCTGCAGGTGGCTGTGAAAAACAATATCGATGT
CTTCTACTTCAGCTGCCTCATCCCACTCAATGTGCTTTTTGTAGAAGATGGCAAAATGGAGCGCCAGGTCTTTCTTGCAA
CATGGAAGGATATTCCCAATGAAAATGAACTTCAGTTTCAGATTAAGGAATGTCATTTAAATGCTGACACTGTTTCCAGC
AAGTTGCAAAACAACAATGTTTATACTATTGCCAAGAGGAATGTGGAAGGGCAGGATATGCTGTACCAATCCCTGAAGCT
CACTAATGGCATTTGGATTTTGGCCGAGCTACGTATCCAGCCGGGAAACCCCAATTATACGCTGTCACTGAAGTGTAGAG
CTCCTGAAGTCTCTCAATACATCTATCAGGTCTACGACAGCATTTTGAAAAACTAA

Library Parental gene expression (RPM)
SRP051959_spleen 104 .39 RPM
SRP051959_skeletal_muscle 44 .88 RPM
SRP051959_lymph_node 108 .65 RPM
SRP051959_lung 121 .63 RPM
SRP051959_liver 48 .19 RPM
SRP051959_kidney 82 .58 RPM
SRP051959_heart 79 .46 RPM
SRP051959_colon 80 .76 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000020316 possible_ortholog 1 retrogene
retro_btau_1675,
Choloepus hoffmanni ENSCHOG00000010864 possible_ortholog 1 retrogene
retro_chof_2310,
Gorilla gorilla ENSGGOG00000015593 ortholog_one2one 1 retrogene
retro_ggor_3044,
Loxodonta africana ENSLAFG00000015777 possible_ortholog 1 retrogene
retro_lafr_446,
Myotis lucifugus ENSMLUG00000002837 ortholog_one2one 1 retrogene
retro_mluc_2443,
Mustela putorius furo ENSMPUG00000014910 possible_ortholog 1 retrogene
retro_mputfur_704,
Mus musculus ENSMUSG00000035152 possible_ortholog 1 retrogene
retro_mmus_2503,
Nomascus leucogenys ENSNLEG00000013939 possible_ortholog 2 retrogenes
retro_nleu_1925, retro_nleu_2554,
Pongo abelii ENSPPYG00000008188 possible_ortholog 1 retrogene
retro_pabe_3793,
Pan troglodytes ENSPTRG00000009021 possible_ortholog 1 retrogene
retro_ptro_3248,
Rattus norvegicus ENSRNOG00000009988 possible_ortholog 2 retrogenes
retro_rnor_1267, retro_rnor_574,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1850 92.81 84.75
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSCJAG00000014853 retrocopies