Parental gene:

NFYB, ENSCJAG00000014610

Aliases:None
Description:nuclear transcription factor Y, beta [Source:HGNC Symbol;Acc:7805]
Organism:Marmoset (Callithrix jacchus)
Coordinates:9:94121672..94143610(-)


>ENSCJAG00000014610
ATGACAATGGATGGTGACAGTTCTACAACAGATGCTTCTCAATTAGGAATCTCTGCAGACTATATTGGAGGAAGTCATTA
TGTTATACAGCCTCATGATGATACTGAAGACAGCATGAATGATCATGAAGACACAAATGGTTCAAAGGAAAGTTTCAGAG
AACAAGATATATATCTTCCAATAGCAAACGTGGCTAGGATAATGAAAAATGCCATACCTCAAACAGGAAAGATTGCAAAA
GATGCCAAAGAATGTGTTCAAGAATGTGTAAGTGAGTTCATCAGTTTTATAACATCTGAAGCAAGTGAAAGGTGCCATCA
AGAGAAACGGAAAACAATCAATGGAGAGGACATTCTCTTTGCCATGTCTACCTTAGGCTTTGACAGTTATGTGGAACCTC
TGAAATTATACCTTCAGAAATTCAGAGAGGCTATGAAAGGAGAAAAGGGAATTGGTGGAGCAGTCACAGCTACAGATGGA
TTAAGTGAAGAGCTTACAGAGGAAGCATTTACTAACCAGTTACCAGCTGGCTTAATAACCACAGATGGTCAACAACAAAA
TGTTATGGTTTACACAACATCATATCAACAGATTTCTGGTGTTCAACAAATTCAGTTTTCATGA

Library Parental gene expression (RPM)
SRP051959_spleen 24 .81 RPM
SRP051959_skeletal_muscle 21 .05 RPM
SRP051959_lymph_node 29 .75 RPM
SRP051959_lung 27 .12 RPM
SRP051959_liver 23 .18 RPM
SRP051959_kidney 30 .11 RPM
SRP051959_heart 26 .45 RPM
SRP051959_colon 20 .26 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006686 ortholog_one2one 1 retrogene
retro_amel_940,
Bos taurus ENSBTAG00000030744 ortholog_one2one 1 retrogene
retro_btau_1681,
Canis familiaris ENSCAFG00000029177 ortholog_one2one 1 retrogene
retro_cfam_1677,
Callithrix jacchus ENSCJAG00000017917 within_species_paralog 1 retrogene
retro_cjac_4121,
Cavia porcellus ENSCPOG00000003213 ortholog_one2many 1 retrogene
retro_cpor_901,
Dasypus novemcinctus ENSDNOG00000009984 possible_ortholog 3 retrogenes
retro_dnov_1536, retro_dnov_758, retro_dnov_855,
Felis catus ENSFCAG00000026471 ortholog_one2many 1 retrogene
retro_fcat_207,
Homo sapiens ENSG00000120837 ortholog_one2one 2 retrogenes
retro_hsap_2827, retro_hsap_4047,
Gorilla gorilla ENSGGOG00000008866 ortholog_one2one 1 retrogene
retro_ggor_2714,
Myotis lucifugus ENSMLUG00000005468 ortholog_one2many 1 retrogene
retro_mluc_1764,
Macaca mulatta ENSMMUG00000022570 ortholog_one2one 3 retrogenes
retro_mmul_1433, retro_mmul_2119, retro_mmul_2335,
Mustela putorius furo ENSMPUG00000012064 ortholog_one2one 3 retrogenes
retro_mputfur_1531, retro_mputfur_1563, retro_mputfur_1567,
Nomascus leucogenys ENSNLEG00000006543 ortholog_one2one 2 retrogenes
retro_nleu_1203, retro_nleu_2061,
Oryctolagus cuniculus ENSOCUG00000004415 ortholog_one2one 4 retrogenes
retro_ocun_1334, retro_ocun_1816, retro_ocun_1824, retro_ocun_1845,
Ochotona princeps ENSOPRG00000008117 ortholog_one2many 2 retrogenes
retro_opri_36, retro_opri_657,
Pongo abelii ENSPPYG00000004892 possible_ortholog 3 retrogenes
retro_pabe_2201, retro_pabe_2803, retro_pabe_3319,
Ictidomys tridecemlineatus ENSSTOG00000005279 ortholog_one2one 1 retrogene
retro_itri_1851,
Tupaia belangeri ENSTBEG00000005731 ortholog_one2one 1 retrogene
retro_tbel_4360,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1133 59.63 76.81
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Download FASTA sequences of all ENSCJAG00000014610 retrocopies