Parental gene: | ACTR3, ENSCJAG00000014091 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 6:87940787..88011216(+) |
>ENSCJAG00000014091
ATGGCGGGACGGCTGCCGGCCTGTGTAGTGGACTGTGGCACGGGGTATACAAAACTAGGATATGCTGGAAATACAGAACC
ACAGTTTATCATCCCTTCTTGTATTGCTATTAAGGAGTCGGCAAAAGTGGGTGATCAAGCTCAAAGGAGGGTGATGAAAG
GTGTTGATGACCTAGACTTCTTCATTGGTGATGAAGCAATAGAAAAACCTACATATGCAACAAAGTGGCCAATCCGCCAT
GGTATAGTTGAAGATTGGGACTTGATGGAAAGGTTTATGGAGCAAGTGATCTTTAAATATTTAAGGGCAGAACCTGAAGA
TCATTATTTTCTTTTGACTGAACCTCCATTGAATACTCCAGAAAACAGGGAATATACTGCTGAAATAATGTTTGAATCTT
TCAATGTTCCAGGCTTGTACATTGCTGTGCAGGCTGTTCTTGCCTTAGCTGCATCTTGGACCTCAAGACAAGTAGGAGAA
CGGACATTGACTGGTACGGTAATAGACAGTGGAGATGGTGTCACTCATGTCATTCCTGTGGCTGAAGGGTATGTGATTGG
CAGCTGTATTAAACACATTCCAATCGCAGGACGAGATATAACATATTTTATTCAGCAACTGCTGAGAGACCGAGAAGTAG
GAATCCCTCCAGAACAATCTTTGGAAACTGCTAAGGCAGTAAAGGAGCGCTATAGTTATGTCTGCCCAGATTTAGTAAAA
GAATTTAACAAGTATGATACAGATGGGTCAAAATGGATTAAACAGTATACTGGAATCAATGCTATCTCAAAGAAAGAATT
TTCCATTGATGTTGGTTATGAGAGATTTTTGGGACCTGAAATCTTTTTTCATCCAGAGTTTGCTAATCCAGACTTTACAC
AACCTATCTCAGAAGTTGTAGATGAAGTAATTCAGAATTGTCCTATTGATGTCAGACGACCTCTCTACAAGAATATTGTC
CTCTCTGGAGGTTCAACCATGTTCAGGGACTTTGGACGTCGCTTGCAAAGAGATTTGAAAAGAACTGTAGATGCCCGTCT
GAAATTAAGTGAGGAATTGAGTGGCGGTAGATTGAAGCCAAAACCTATTGATGTACAAGTCATTACACACCACATGCAGC
GATACGCAGTTTGGTTTGGAGGATCAATGCTGGCTTCCACGCCTGAGTTCTACCAAGTATGCCACACCAAAAAGGATTAT
GAAGAAATTGGACCTAGCATTTGTCGTCACAATCCAGTGTTTGGAGTCATGTCGTAA
ATGGCGGGACGGCTGCCGGCCTGTGTAGTGGACTGTGGCACGGGGTATACAAAACTAGGATATGCTGGAAATACAGAACC
ACAGTTTATCATCCCTTCTTGTATTGCTATTAAGGAGTCGGCAAAAGTGGGTGATCAAGCTCAAAGGAGGGTGATGAAAG
GTGTTGATGACCTAGACTTCTTCATTGGTGATGAAGCAATAGAAAAACCTACATATGCAACAAAGTGGCCAATCCGCCAT
GGTATAGTTGAAGATTGGGACTTGATGGAAAGGTTTATGGAGCAAGTGATCTTTAAATATTTAAGGGCAGAACCTGAAGA
TCATTATTTTCTTTTGACTGAACCTCCATTGAATACTCCAGAAAACAGGGAATATACTGCTGAAATAATGTTTGAATCTT
TCAATGTTCCAGGCTTGTACATTGCTGTGCAGGCTGTTCTTGCCTTAGCTGCATCTTGGACCTCAAGACAAGTAGGAGAA
CGGACATTGACTGGTACGGTAATAGACAGTGGAGATGGTGTCACTCATGTCATTCCTGTGGCTGAAGGGTATGTGATTGG
CAGCTGTATTAAACACATTCCAATCGCAGGACGAGATATAACATATTTTATTCAGCAACTGCTGAGAGACCGAGAAGTAG
GAATCCCTCCAGAACAATCTTTGGAAACTGCTAAGGCAGTAAAGGAGCGCTATAGTTATGTCTGCCCAGATTTAGTAAAA
GAATTTAACAAGTATGATACAGATGGGTCAAAATGGATTAAACAGTATACTGGAATCAATGCTATCTCAAAGAAAGAATT
TTCCATTGATGTTGGTTATGAGAGATTTTTGGGACCTGAAATCTTTTTTCATCCAGAGTTTGCTAATCCAGACTTTACAC
AACCTATCTCAGAAGTTGTAGATGAAGTAATTCAGAATTGTCCTATTGATGTCAGACGACCTCTCTACAAGAATATTGTC
CTCTCTGGAGGTTCAACCATGTTCAGGGACTTTGGACGTCGCTTGCAAAGAGATTTGAAAAGAACTGTAGATGCCCGTCT
GAAATTAAGTGAGGAATTGAGTGGCGGTAGATTGAAGCCAAAACCTATTGATGTACAAGTCATTACACACCACATGCAGC
GATACGCAGTTTGGTTTGGAGGATCAATGCTGGCTTCCACGCCTGAGTTCTACCAAGTATGCCACACCAAAAAGGATTAT
GAAGAAATTGGACCTAGCATTTGTCGTCACAATCCAGTGTTTGGAGTCATGTCGTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 146 .91 RPM |
| SRP051959_skeletal_muscle | 24 .63 RPM |
| SRP051959_lymph_node | 176 .02 RPM |
| SRP051959_lung | 112 .70 RPM |
| SRP051959_liver | 47 .96 RPM |
| SRP051959_kidney | 67 .07 RPM |
| SRP051959_heart | 46 .78 RPM |
| SRP051959_colon | 183 .47 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000003401 | ortholog_one2many | 1 retrogene | |
| Homo sapiens | ENSG00000115091 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000011346 | ortholog_one2one | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000010717 | ortholog_one2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000026341 | ortholog_one2many | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000011619 | ortholog_one2one | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000012798 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000012388 | ortholog_one2one | 2 retrogenes | |
| Vicugna pacos | ENSVPAG00000009479 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_385 | 94.30 | 83.71 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_3602 | 87.15 | 85.41 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_3813 | 86.67 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_4005 | 86.67 | 82.89 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000014091 retrocopies