Parental gene: | CTBP2, ENSCJAG00000012539 |
| Aliases: | None |
| Description: | C-terminal binding protein 2 [Source:HGNC Symbol;Acc:2495] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 12:112913770..113087091(-) |
>ENSCJAG00000012539
ATGCCAGTTCCCAGCAGGCATATAAATATTGGTCGTTCTCAGAGCTGGGATGCTGCCGGGTGGTACGAGGGCTCCTGGGA
GAACGCCGAGTGCCTGCAGCCTCTGGGGAGGAGAAGCTCTATGACATATGGCACAGCAGAGGGGGCTTGGTTCGAGCCAA
ACCACCGACCACAGGACGCTGCCCTGCCCAGGGCCGCTGAGCCCTACCTGTACCGGGAGGCCGTTTATAACTCAGTGGCT
GCAAGAAAGGGCTCTACTCCTGACTTCACCTTCTACGACAGCAGACAGGCAGTGATGTCTGGTCGCAGCGCCCTGCTGTC
CCGGGATTACTACAGTGACCCATCTGGAACTTCTAGGATGCCCAAAGAGCCTCCCTTCTACCCAGACCCAGGAGTTAGCC
GGCCAGTGCCCAGCTATGCAGTGCTTGGCAGCAGAACGTCATGGGATCACATGCAGGGCCGGTCACCCGCACTGCAGGAC
GCCGGTCACCCATACCGGGATCCTAGAGGTAAAATGATCCCTCAGGGGCAGCAGACACCAAGCAGGGCTGCGTCCCCCAG
GCGGTATGGACGAGAGCAGCCCGACACCAGGTACGGGGTGGAGGCGCCCGCCTACACCCCCAGCCAGGTCTTCAGCGACG
TCAGTGAAAGACCCATTGACCCTGCCCCTGCCAGACAGGTGGCCCCAACGTGCCTGGTGGTGGACCCCAGTTCAGCTGCT
GCCTCTGAGGGCAGCACAGGGGTGGCCCCCGGGGCCCTGAATCGAAGCTACGGGCCCGCCCGGGAAGGCATGCCATCCAA
GATGGCTTATGAGACTTATGACACTGACCTGTCTGCGTTCCAGGTCCTGGGGGGCAAGAGGACCGTGCTCCCCGAGTTCC
TGGCCTTCCTACGAGCGGAAGGGCTGGGCAAGGCCACACTGGCAGCCTTACTGCAGCAAGGCTTTGACTCCCCGGCCGTC
CTGGCCACCCTGGAGGACACAGACATCAAGTCTGTTGCACCCAACCTGGGCCAGGCTCGTGTTCTGAGCCGCCTGGCCAG
CAGCTGCAGGACTGAAATGCAGCTGAGGAGGCAGGACCGGGTGGGCTCCCTGCCGCGGGCGCGGTCCAGCAGCTTCAGCC
ACCGAAGTGAACTGCTCCATGGTGACTTGGCTTCTCTTGGCACTGCAGCCCTGCAGCCCCAGCCTGCAGACCCGGCTCGC
CGCCCCTCCAGCGCACCCTCCCAGCACCTCCTGGAGACGGCAGCCACCTATTCCACCCCTGGCGTGGGCGCCCATGCCCC
CCACTTCCCCTCCAACTCCGGGTACAGCTCTCCTACCCCTTGCGCCCTGACAGCGCGTCTGAGCCCCACGTATCCCCTGC
AGGCAGGGGTGGCCTTGACTAACCCAGGCCCCTCGAACCCCCTTCACCCAGGCCCCAGAACAGCCTACTCCACAGCATAC
ACAGTGCCCATGGAACTGCTGAAGAGGGAGCGCAACGTGGCCGCCTCTCCGCTGCCCAGCCCACATGGCAGCCCCCAGGT
CTTGCGGAAGCTGGGTGTCCCCCCGGGGCCATCCACCCTGCCACCAGCCAGCCAGAGCCTCCACACACCTCACTCGCCGT
ACCAGAAGGTGGCCCGGCGCACGGGGGCGCCTATCATCGTATCCACCATGCTTGCACCAGAACCAAGTATCCGCCCCCAG
ATCATGAACGGCCCCCTGCACCCCCGCCCCCTGGTGGCGCTGCTGGACGGCCGCGACTGCACTGTGGAGATGCCCATCCT
GAAGGACCTGGCCACCGTGGCCTTCTGTGACGCGCAGTCCACTCAGGAGATCCACGAGAAGGTTCTAAATGAAGCCGTGG
GCGCCATGATGTACCACACCATCACCCTCACCAGGGAGGACCTAGAAAAGTTCAAGGCTCTGAGAGTGATCGTGCGGATA
GGCAGCGGCTACGACAACGTGGACATCAAGGCTGCCGGCGAGCTGGGAATTGCTGTGTGCAACATCCCATCCGCAGCCGT
GGAAGAGACAGCTGACTCCACCATCTGCCACATCCTCAATCTGTACCGGAGGAACACGTGGCTGTACCAGGCCCTGCGGG
AAGGCACGCGGGTTCAGAGCGTGGAGCAGATCCGAGAGGTGGCCTCGGGAGCGGCCCGTATCCGTGGGGAGACACTGGGC
CTCATCGGCTTCGGTCGCACGGGGCAGGCGGTTGCAGTTCGAGCCAAGGCCTTTGGATTCAGCGTCATATTTTATGACCC
CTACTTGCAGGATGGGATCGAGCGGTCCCTGGGCGTGCAGAGGGTCTACACGCTGCAGGATTTGCTGTATCAGAGCGACT
GCGTCTCCCTGCACTGCAATCTCAACGAACATAACCACCACCTCATCAACGACTTTACCATAAAGCAGATGAGGCAGGGA
GCATTCCTTGTGAACGCAGCCCGTGGCGGCCTGGTGGACGAGAAAGCCTTAGCACAGGCCCTCAAGGAGGGCAGGATACG
AGGGGCAGCCCTCGACGTGCATGAGTCAGAGCCCTTCAGCTTTGCTCAGGGTCCATTGAAAGATGCACCGAATCTCATCT
GCACTCCTCACACTGCCTGGTACAGCGAGCAGGCATCGCTGGAAATGAGGGAGGCCGCTGCCACTGAGATCCGCCGAGCC
ATCACAGGTCGCATCCCAGAAAGCTTAAGAAACTGTGTGAACAAGGAATTTTTCGTCACATCAGCGCCTTGGTCAGTAAT
AGACCAGCAAGCAATTCATCCTGAGCTCAATGGTGCCACATACAGATACCCGCCAGGCATCGTGGGTGTGGCTCCAGGCG
GACTTCCTGCAGCCATGGAAGGGATCATCCCTGGGGGCATCCCAGTGACTCACAACCTCCCGACAGTGGCACATCCTTCC
CAAGCACCCTCTCCCAACCAGCCCACAAAACACGGGGACAATCGAGAGCACCCCAACGAGCAATAG
ATGCCAGTTCCCAGCAGGCATATAAATATTGGTCGTTCTCAGAGCTGGGATGCTGCCGGGTGGTACGAGGGCTCCTGGGA
GAACGCCGAGTGCCTGCAGCCTCTGGGGAGGAGAAGCTCTATGACATATGGCACAGCAGAGGGGGCTTGGTTCGAGCCAA
ACCACCGACCACAGGACGCTGCCCTGCCCAGGGCCGCTGAGCCCTACCTGTACCGGGAGGCCGTTTATAACTCAGTGGCT
GCAAGAAAGGGCTCTACTCCTGACTTCACCTTCTACGACAGCAGACAGGCAGTGATGTCTGGTCGCAGCGCCCTGCTGTC
CCGGGATTACTACAGTGACCCATCTGGAACTTCTAGGATGCCCAAAGAGCCTCCCTTCTACCCAGACCCAGGAGTTAGCC
GGCCAGTGCCCAGCTATGCAGTGCTTGGCAGCAGAACGTCATGGGATCACATGCAGGGCCGGTCACCCGCACTGCAGGAC
GCCGGTCACCCATACCGGGATCCTAGAGGTAAAATGATCCCTCAGGGGCAGCAGACACCAAGCAGGGCTGCGTCCCCCAG
GCGGTATGGACGAGAGCAGCCCGACACCAGGTACGGGGTGGAGGCGCCCGCCTACACCCCCAGCCAGGTCTTCAGCGACG
TCAGTGAAAGACCCATTGACCCTGCCCCTGCCAGACAGGTGGCCCCAACGTGCCTGGTGGTGGACCCCAGTTCAGCTGCT
GCCTCTGAGGGCAGCACAGGGGTGGCCCCCGGGGCCCTGAATCGAAGCTACGGGCCCGCCCGGGAAGGCATGCCATCCAA
GATGGCTTATGAGACTTATGACACTGACCTGTCTGCGTTCCAGGTCCTGGGGGGCAAGAGGACCGTGCTCCCCGAGTTCC
TGGCCTTCCTACGAGCGGAAGGGCTGGGCAAGGCCACACTGGCAGCCTTACTGCAGCAAGGCTTTGACTCCCCGGCCGTC
CTGGCCACCCTGGAGGACACAGACATCAAGTCTGTTGCACCCAACCTGGGCCAGGCTCGTGTTCTGAGCCGCCTGGCCAG
CAGCTGCAGGACTGAAATGCAGCTGAGGAGGCAGGACCGGGTGGGCTCCCTGCCGCGGGCGCGGTCCAGCAGCTTCAGCC
ACCGAAGTGAACTGCTCCATGGTGACTTGGCTTCTCTTGGCACTGCAGCCCTGCAGCCCCAGCCTGCAGACCCGGCTCGC
CGCCCCTCCAGCGCACCCTCCCAGCACCTCCTGGAGACGGCAGCCACCTATTCCACCCCTGGCGTGGGCGCCCATGCCCC
CCACTTCCCCTCCAACTCCGGGTACAGCTCTCCTACCCCTTGCGCCCTGACAGCGCGTCTGAGCCCCACGTATCCCCTGC
AGGCAGGGGTGGCCTTGACTAACCCAGGCCCCTCGAACCCCCTTCACCCAGGCCCCAGAACAGCCTACTCCACAGCATAC
ACAGTGCCCATGGAACTGCTGAAGAGGGAGCGCAACGTGGCCGCCTCTCCGCTGCCCAGCCCACATGGCAGCCCCCAGGT
CTTGCGGAAGCTGGGTGTCCCCCCGGGGCCATCCACCCTGCCACCAGCCAGCCAGAGCCTCCACACACCTCACTCGCCGT
ACCAGAAGGTGGCCCGGCGCACGGGGGCGCCTATCATCGTATCCACCATGCTTGCACCAGAACCAAGTATCCGCCCCCAG
ATCATGAACGGCCCCCTGCACCCCCGCCCCCTGGTGGCGCTGCTGGACGGCCGCGACTGCACTGTGGAGATGCCCATCCT
GAAGGACCTGGCCACCGTGGCCTTCTGTGACGCGCAGTCCACTCAGGAGATCCACGAGAAGGTTCTAAATGAAGCCGTGG
GCGCCATGATGTACCACACCATCACCCTCACCAGGGAGGACCTAGAAAAGTTCAAGGCTCTGAGAGTGATCGTGCGGATA
GGCAGCGGCTACGACAACGTGGACATCAAGGCTGCCGGCGAGCTGGGAATTGCTGTGTGCAACATCCCATCCGCAGCCGT
GGAAGAGACAGCTGACTCCACCATCTGCCACATCCTCAATCTGTACCGGAGGAACACGTGGCTGTACCAGGCCCTGCGGG
AAGGCACGCGGGTTCAGAGCGTGGAGCAGATCCGAGAGGTGGCCTCGGGAGCGGCCCGTATCCGTGGGGAGACACTGGGC
CTCATCGGCTTCGGTCGCACGGGGCAGGCGGTTGCAGTTCGAGCCAAGGCCTTTGGATTCAGCGTCATATTTTATGACCC
CTACTTGCAGGATGGGATCGAGCGGTCCCTGGGCGTGCAGAGGGTCTACACGCTGCAGGATTTGCTGTATCAGAGCGACT
GCGTCTCCCTGCACTGCAATCTCAACGAACATAACCACCACCTCATCAACGACTTTACCATAAAGCAGATGAGGCAGGGA
GCATTCCTTGTGAACGCAGCCCGTGGCGGCCTGGTGGACGAGAAAGCCTTAGCACAGGCCCTCAAGGAGGGCAGGATACG
AGGGGCAGCCCTCGACGTGCATGAGTCAGAGCCCTTCAGCTTTGCTCAGGGTCCATTGAAAGATGCACCGAATCTCATCT
GCACTCCTCACACTGCCTGGTACAGCGAGCAGGCATCGCTGGAAATGAGGGAGGCCGCTGCCACTGAGATCCGCCGAGCC
ATCACAGGTCGCATCCCAGAAAGCTTAAGAAACTGTGTGAACAAGGAATTTTTCGTCACATCAGCGCCTTGGTCAGTAAT
AGACCAGCAAGCAATTCATCCTGAGCTCAATGGTGCCACATACAGATACCCGCCAGGCATCGTGGGTGTGGCTCCAGGCG
GACTTCCTGCAGCCATGGAAGGGATCATCCCTGGGGGCATCCCAGTGACTCACAACCTCCCGACAGTGGCACATCCTTCC
CAAGCACCCTCTCCCAACCAGCCCACAAAACACGGGGACAATCGAGAGCACCCCAACGAGCAATAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 14 .64 RPM |
| SRP051959_skeletal_muscle | 12 .51 RPM |
| SRP051959_lymph_node | 5 .66 RPM |
| SRP051959_lung | 15 .55 RPM |
| SRP051959_liver | 3 .70 RPM |
| SRP051959_kidney | 23 .67 RPM |
| SRP051959_heart | 18 .52 RPM |
| SRP051959_colon | 27 .78 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000012775 | possible_ortholog | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000019916 | within_species_paralog | 4 retrogenes | |
| Cavia porcellus | ENSCPOG00000008397 | possible_ortholog | 1 retrogene | |
| Homo sapiens | ENSG00000175029 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000007076 | ortholog_one2many | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000024152 | possible_ortholog | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000002746 | ortholog_one2one | 10 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_1866 | 99.55 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_2528 | 92.81 | 93.03 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000012539 retrocopies