Parental gene: | ATIC, ENSCJAG00000011695 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 6:131652388..131689442(+) |
>ENSCJAG00000011695
ATGTCTTCTTTTTCAGCCTTGTTCAGTGTCTCTGACAAAACCGGCCTTGTGGAATTTGCAAGAAACCTGATCTCTCTCGG
TTTGAATCTGGTCGCTTCCGGAGGGACTGCAAAAGCTCTCAGGGATGCTGGTCTGGCAGTCAGAGATGTCTCTGAGTTGA
CAGGATTTCCTGAAATGTTGGGGGGACGTGTGAAAACTTTGCATCCTGCAGTCCATGCTGGAATCCTGGCTCGCAATATT
CCAGAAGATAATGCTGACATGGCCAGACTTGATTTCAATCTTATAAGAGTTGTTGCCTGCAATCTCTATCCCTTTGTGAA
GACAGTGGCTTCTCCAGGTGTAACTGTTGAGGAAGCTGTGGAGCAAATTGACATTGGTGGAGTAACCTTACTGAGAGCTG
CAGCCAAAAACCACGCTCGAGTGACAGTGGTGTGTGAACCTGAGGACTACGTGGCAGTGTCCACAGAGATGCAGAGCTCC
GAGAGCAAGGACACCTCCTTGGAGACTAGACGCCAGTTAGCCTTGAAGGCATTCACTCATACGGCACAATACGATGAAGC
AATTTCAGATTATTTCAGGAAACAGTACAGCAAAGACGTATCTCAGATGCCCTTGCGGTATGGAATGAACCCTCATCAGA
CCCCTGCACAGCTGTACACACTGAAGCCCAAGCTTCCCATCACAGTTCTAAATGGAGCCCCTGGATTTATAAACCTGTGC
GATGCTTTGAATGCCTGGCAGCTGGTGAAGGAACTCAAAGAGGCGTTAGGTATTCCAGCCGCTGCCTCTTTCAAACATGT
CAGCCCAGCAGGTGCCGCTGTTGGAATTCCACTCAGTGAAGATGAGGCCAGAGTCTGCATGGTTTTTGATCTCTATAAAA
CCCTTACACCCATTTCAACGGCATACGCAAGAGCAAGAGGGGCTGATAGGATGTCGTCATTTGGCGATTTTGTGGCATTG
TCTGACGTTTGTGATGTACCAACTGCAAAAATTATTTCCAGAGAAGTCTCTGATGGTATAATTGCCCCAGGATATGAAGA
AGAAGCCTTGACAATACTTTCCAAAAAGAAAAATGGAAACTACTGTGTTCTTCAGATGGACCAGTCTTACAAACCAGATG
AAAATGAAGTTCGAACGCTCTTCGGTCTTCATTTAAGCCAGAAGAGAAATAACGGTGTCGTTGACAAGTCATTATTTAGC
AATGTTGTCACCAAGAATAAAGATCTGCCAGAGTCTGCCCTCCGAGACCTCATCGTAGCCACCATTGCTGTCAAGTACAC
TCAGTCCAACTCCGTGTGCTACGCCAAGAATGGGCAGGTTATCGGCATTGGAGCTGGACAGCAGTCTCGTATACACTGCA
CCCGGCTTGCAGGAGATAAGGCAAACTACTGGTGGCTTAGACACCATCCACAGGTGCTCTCGATGAAGTTTAAAACGGGA
GTGAAGAGAGCAGAAATCTCCAATGCCATCGATCAATACGTGACTGGAACCATCGGCGAGGATGAAGATTTGATAAAGTG
GAAGGCCCTGTTTGAGGAAGTCCCTGAATTACTCACTGAGGCAGAGAAGAAGGAATGGGTTGACAAACTTAGTGAAGTTT
CTGTCAGCTCAGATGCCTTCTTCCCTTTCAGAGATAATGTAGACAGAGCTAAAAGGAGCGGTGTGGCCTACATTGCGGCT
CCCTCCGGCTCTGCTGCTGACAAAGTTGTGATCGAGGCCTGCGATGAACTGGGAATCATCCTCGCTCATACGAACCTTCG
GCTCTTCCACCACTGA
ATGTCTTCTTTTTCAGCCTTGTTCAGTGTCTCTGACAAAACCGGCCTTGTGGAATTTGCAAGAAACCTGATCTCTCTCGG
TTTGAATCTGGTCGCTTCCGGAGGGACTGCAAAAGCTCTCAGGGATGCTGGTCTGGCAGTCAGAGATGTCTCTGAGTTGA
CAGGATTTCCTGAAATGTTGGGGGGACGTGTGAAAACTTTGCATCCTGCAGTCCATGCTGGAATCCTGGCTCGCAATATT
CCAGAAGATAATGCTGACATGGCCAGACTTGATTTCAATCTTATAAGAGTTGTTGCCTGCAATCTCTATCCCTTTGTGAA
GACAGTGGCTTCTCCAGGTGTAACTGTTGAGGAAGCTGTGGAGCAAATTGACATTGGTGGAGTAACCTTACTGAGAGCTG
CAGCCAAAAACCACGCTCGAGTGACAGTGGTGTGTGAACCTGAGGACTACGTGGCAGTGTCCACAGAGATGCAGAGCTCC
GAGAGCAAGGACACCTCCTTGGAGACTAGACGCCAGTTAGCCTTGAAGGCATTCACTCATACGGCACAATACGATGAAGC
AATTTCAGATTATTTCAGGAAACAGTACAGCAAAGACGTATCTCAGATGCCCTTGCGGTATGGAATGAACCCTCATCAGA
CCCCTGCACAGCTGTACACACTGAAGCCCAAGCTTCCCATCACAGTTCTAAATGGAGCCCCTGGATTTATAAACCTGTGC
GATGCTTTGAATGCCTGGCAGCTGGTGAAGGAACTCAAAGAGGCGTTAGGTATTCCAGCCGCTGCCTCTTTCAAACATGT
CAGCCCAGCAGGTGCCGCTGTTGGAATTCCACTCAGTGAAGATGAGGCCAGAGTCTGCATGGTTTTTGATCTCTATAAAA
CCCTTACACCCATTTCAACGGCATACGCAAGAGCAAGAGGGGCTGATAGGATGTCGTCATTTGGCGATTTTGTGGCATTG
TCTGACGTTTGTGATGTACCAACTGCAAAAATTATTTCCAGAGAAGTCTCTGATGGTATAATTGCCCCAGGATATGAAGA
AGAAGCCTTGACAATACTTTCCAAAAAGAAAAATGGAAACTACTGTGTTCTTCAGATGGACCAGTCTTACAAACCAGATG
AAAATGAAGTTCGAACGCTCTTCGGTCTTCATTTAAGCCAGAAGAGAAATAACGGTGTCGTTGACAAGTCATTATTTAGC
AATGTTGTCACCAAGAATAAAGATCTGCCAGAGTCTGCCCTCCGAGACCTCATCGTAGCCACCATTGCTGTCAAGTACAC
TCAGTCCAACTCCGTGTGCTACGCCAAGAATGGGCAGGTTATCGGCATTGGAGCTGGACAGCAGTCTCGTATACACTGCA
CCCGGCTTGCAGGAGATAAGGCAAACTACTGGTGGCTTAGACACCATCCACAGGTGCTCTCGATGAAGTTTAAAACGGGA
GTGAAGAGAGCAGAAATCTCCAATGCCATCGATCAATACGTGACTGGAACCATCGGCGAGGATGAAGATTTGATAAAGTG
GAAGGCCCTGTTTGAGGAAGTCCCTGAATTACTCACTGAGGCAGAGAAGAAGGAATGGGTTGACAAACTTAGTGAAGTTT
CTGTCAGCTCAGATGCCTTCTTCCCTTTCAGAGATAATGTAGACAGAGCTAAAAGGAGCGGTGTGGCCTACATTGCGGCT
CCCTCCGGCTCTGCTGCTGACAAAGTTGTGATCGAGGCCTGCGATGAACTGGGAATCATCCTCGCTCATACGAACCTTCG
GCTCTTCCACCACTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 17 .69 RPM |
| SRP051959_skeletal_muscle | 15 .94 RPM |
| SRP051959_lymph_node | 14 .13 RPM |
| SRP051959_lung | 14 .30 RPM |
| SRP051959_liver | 18 .15 RPM |
| SRP051959_kidney | 16 .28 RPM |
| SRP051959_heart | 14 .15 RPM |
| SRP051959_colon | 13 .31 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Microcebus murinus | ENSMICG00000014573 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000001830 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000015612 | ortholog_one2one | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000007676 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000026192 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000015511 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_706 | 96.85 | 74.96 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_1538 | 99.06 | 72.08 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_2185 | 89.83 | 59.73 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_3116 | 86.24 | 55.16 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000011695 retrocopies