Parental gene:

FUNDC1, ENSCJAG00000010876

Aliases:None
Description:FUN14 domain containing 1 [Source:HGNC Symbol;Acc:28746]
Organism:Marmoset (Callithrix jacchus)
Coordinates:X:43482100..43502171(-)


>ENSCJAG00000010876
ATGGCGACCCGGAACCCCCCTCCCCAAGAATATGAAAGCGATGACGACTCTTACGAAGTGTTGGATTTAACTGAGTATGC
AAGAAGACACCAGTGGTGGAATCGAGTGTTTGGCCACAGTTCGGGACCTATGGTAGAAAAATACTCAGTAGCTACCCAGA
TTGTAATGGGTGGCGTGACTGGCTGGTGTGCAGGATTTCTGTTCCAGAAAGTTGGAAAACTTGCAGCAACTGCAGTAGGT
GGTGGCTTTCTTCTCCTTCAGATTGCTAGTCATAGTGGCTATGTGCAGATTGACTGGAAGAGGGTTGAAAAGGATGTAAA
CAAAGCAAAAAGACAGATTAAGAAACGAGCGAACAAAGCAGCACCTGAAATCAACAATTTAATTGAAGAAGCAACAGAAT
TTATCAAGCAGAACATTGTGATATCCAGTGGATTTGTGGGAGGCTTTTTGCTCGGACTTGCATCTTAA

Library Parental gene expression (RPM)
SRP051959_spleen 2 .94 RPM
SRP051959_skeletal_muscle 2 .82 RPM
SRP051959_lymph_node 3 .22 RPM
SRP051959_lung 3 .04 RPM
SRP051959_liver 1 .73 RPM
SRP051959_kidney 3 .95 RPM
SRP051959_heart 3 .47 RPM
SRP051959_colon 1 .93 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000004287 within_species_paralog 3 retrogenes
retro_cjac_1977, retro_cjac_2387, retro_cjac_651,
Cavia porcellus ENSCPOG00000012962 ortholog_one2one 2 retrogenes
retro_cpor_507, retro_cpor_508,
Echinops telfairi ENSETEG00000012763 ortholog_one2one 3 retrogenes
retro_etel_1614, retro_etel_697, retro_etel_852,
Homo sapiens ENSG00000069509 ortholog_one2one 1 retrogene
retro_hsap_936,
Gorilla gorilla ENSGGOG00000023311 ortholog_one2one 1 retrogene
retro_ggor_755,
Latimeria chalumnae ENSLACG00000010215 ortholog_one2one 1 retrogene
retro_lcha_74,
Macropus eugenii ENSMEUG00000006795 ortholog_one2one 5 retrogenes
retro_meug_1597, retro_meug_2127, retro_meug_232, retro_meug_415, retro_meug_994,
Microcebus murinus ENSMICG00000000450 ortholog_one2one 2 retrogenes
retro_mmur_1189, retro_mmur_1461,
Macaca mulatta ENSMMUG00000003505 ortholog_one2many 1 retrogene
retro_mmul_38,
Monodelphis domestica ENSMODG00000021088 ortholog_one2one 3 retrogenes
retro_mdom_1262, retro_mdom_769, retro_mdom_917,
Nomascus leucogenys ENSNLEG00000002513 ortholog_one2one 2 retrogenes
retro_nleu_2760, retro_nleu_294,
Oryctolagus cuniculus ENSOCUG00000029753 ortholog_one2many 5 retrogenes
retro_ocun_1008, retro_ocun_1376, retro_ocun_1567, retro_ocun_27, retro_ocun_314,
Pongo abelii ENSPPYG00000020268 ortholog_one2one 2 retrogenes
retro_pabe_806, retro_pabe_829,
Pelodiscus sinensis ENSPSIG00000013793 ortholog_one2one 1 retrogene
retro_psin_30,
Pan troglodytes ENSPTRG00000021821 ortholog_one2one 1 retrogene
retro_ptro_648,
Rattus norvegicus ENSRNOG00000003470 ortholog_one2one 1 retrogene
retro_rnor_2644,
Sarcophilus harrisii ENSSHAG00000000501 ortholog_one2one 1 retrogene
retro_shar_222,
Tarsius syrichta ENSTSYG00000009139 ortholog_one2one 1 retrogene
retro_tsyr_1522,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_896 77.42 98.71
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Download FASTA sequences of all ENSCJAG00000010876 retrocopies