Parental gene: | CCNB1IP1, ENSCJAG00000009967 |
| Aliases: | None |
| Description: | cyclin B1 interacting protein 1, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:19437] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 10:44681047..44706884(-) |
>ENSCJAG00000009967
ATGTCTTTGTGTGAAGACATGCTGCTTTGTAATTATCGAAAGTGTCGCATCAAACTCTCTGGCTATGCATGGGTCACTGC
CTGTTCTCACATCTTCTGTGATCAGCATGGTAGTGGTGAGTTTAGTCGCTCACCAGCTATCTGTCCTGCCTGCAACAGTA
CCCTTTCTGGAAAGCTAGACATTGTCCGCACAGAACTCAGTCCGTCAGAGGAATATAAAGCTATGGTGTTGGCAGGACTG
CGACCAGAGATCGTGCTGGACATTAGCTCCCGAGCACTGGCCTTCTGGACATACCAGGTACATCAAGAACGTCTCTATCA
AGAATACAATTTCAGCAAGGCTGAGGGCCATCTGAAACAGATGGAGAAAATATATACTCAGCAAATACAAAGCAAGGATG
TAGAATTGACCTCTATGAAAGGGGAGGTCACCTCCATGAAGAAAGTGCTAGAAGAATACAAAAAAAAGTTCAGTGACATC
TCTGAGAAACTTATGGAGCGCAATCGTCAGTATCAAAAGCTCCAAGGCCTCTATGATAGCCTTAGGCTACGAAACATCGC
TGTTGCTAACCATGAAGGCACCCTTGAACCACCCATGATTGCACAGTCTGGTGTTTTTGGCTTTCCGTTAGGTAACAACT
CCAAGTTTCCTTTGGATAGTTCACCTGTTCGAAATCGGGGAGATGGAGATGGAGATTTTCAGTTCAGACCATTTTTTGTA
GGTTCTCCCACAGCACCTGAACCCAGCAACAGCTTTTTTAGTTTTGCCTCTCCAAGTCGTGAATTAGAGCACCAGCAAGT
TTCTAGCAGGGCCTTCAAAGTAAAAAGAATTTGA
ATGTCTTTGTGTGAAGACATGCTGCTTTGTAATTATCGAAAGTGTCGCATCAAACTCTCTGGCTATGCATGGGTCACTGC
CTGTTCTCACATCTTCTGTGATCAGCATGGTAGTGGTGAGTTTAGTCGCTCACCAGCTATCTGTCCTGCCTGCAACAGTA
CCCTTTCTGGAAAGCTAGACATTGTCCGCACAGAACTCAGTCCGTCAGAGGAATATAAAGCTATGGTGTTGGCAGGACTG
CGACCAGAGATCGTGCTGGACATTAGCTCCCGAGCACTGGCCTTCTGGACATACCAGGTACATCAAGAACGTCTCTATCA
AGAATACAATTTCAGCAAGGCTGAGGGCCATCTGAAACAGATGGAGAAAATATATACTCAGCAAATACAAAGCAAGGATG
TAGAATTGACCTCTATGAAAGGGGAGGTCACCTCCATGAAGAAAGTGCTAGAAGAATACAAAAAAAAGTTCAGTGACATC
TCTGAGAAACTTATGGAGCGCAATCGTCAGTATCAAAAGCTCCAAGGCCTCTATGATAGCCTTAGGCTACGAAACATCGC
TGTTGCTAACCATGAAGGCACCCTTGAACCACCCATGATTGCACAGTCTGGTGTTTTTGGCTTTCCGTTAGGTAACAACT
CCAAGTTTCCTTTGGATAGTTCACCTGTTCGAAATCGGGGAGATGGAGATGGAGATTTTCAGTTCAGACCATTTTTTGTA
GGTTCTCCCACAGCACCTGAACCCAGCAACAGCTTTTTTAGTTTTGCCTCTCCAAGTCGTGAATTAGAGCACCAGCAAGT
TTCTAGCAGGGCCTTCAAAGTAAAAAGAATTTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 5 .23 RPM |
| SRP051959_skeletal_muscle | 10 .59 RPM |
| SRP051959_lymph_node | 7 .28 RPM |
| SRP051959_lung | 5 .58 RPM |
| SRP051959_liver | 0 .97 RPM |
| SRP051959_kidney | 2 .68 RPM |
| SRP051959_heart | 5 .05 RPM |
| SRP051959_colon | 3 .57 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Homo sapiens | ENSG00000100814 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000004586 | ortholog_one2one | 1 retrogene | |
| Microcebus murinus | ENSMICG00000000893 | ortholog_one2one | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000016251 | ortholog_one2one | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000010636 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000006088 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000026056 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000004394 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_3244 | 88.85 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_4197 | 66.24 | 82.31 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000009967 retrocopies