Parental gene: | DDX43, ENSCJAG00000009966 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 4:71672608..71690637(+) |
>ENSCJAG00000009966
ATGTCCCAACACGGAGAAGCCCCCAAGGCCTCTACATGGGTCGTTGCTGGCCGACGAAGTTCGACGGCGTCCCGGGCGCC
AGAAAGGAGGTTGGCGGAGGAGTTGAATCGAGGAGGTTCGGAGGGATATAGGGTCGTCAGAGGTGGCTGCTGGAGAGGTG
CCTCTAGGCCCCCGAACGCCGTGGCCGCTGGTCACAGGGAACCGCCGCTATGTTTTGCTTTGAAGAACCACTTTGTCGGC
GCGGTGATCGGTCGTGGTGGGTCGAAAATAAAGCATATACAAAATACAACAAACACCATAATCCAAATAATACAAGAAAG
ACCAGAATCATTTGTCAAAATATATGGCAGCAGAGCAATGCAAGGAAAAGCGAAAGCAGTGATAGATAATTTTGTGAAAA
AGCTAGAAGAAAATTCAGAATGCAGAGTTGTTGAAAAAACTAATCTGATAAAAATGTTTTTAACAGGTGTTGCCTTACAA
CCTTCTGTAGTTGCAGGAGCTCGGCCATTGATAGATTGGGATCAAATTAGAGAGGAAGGTTTGAAATGGCAGCAAAAAAA
GTGGGCAGATTTACCACCAATTAAGAAAAACTTTTATAAAGAGTCGGCTGCCACAAGTGCGATGTCCAAAGTACAAGCAG
ATAGTTGGAGGAAAGAAAATTTTAATATAACATGGGATGACTTGAAGGATGGGGAGAAACGACCTATCCCCAATCCAACC
TGTACATTTGATGACGCGTTTCATTACTATCCTGAGGTTATGGAAAACATTAAAAAATCAGGTTTTAAAAAGCCAACACC
TATTCAGGCACAAGCATGGCCCATTGTGTTGCAAGGAATAGATCTTATAGGAGTAGCCCAAACTGGAACAGGGAAGACAT
TGTGTTATTTAATGCCTGGATTTATTCATTTGGACCTTCAACCAACCTTTAAAGGTCAAAGGAATAGACCCGGCATGTTA
GTTCTAACTCCCACTAGGGAGTTAGCACTTCAAGTTGAAGGAGAATGTTGCAAATATTCATATAAAGGGCTTCGGAGTGT
TTGTGTATATGGTGGTGGAAACAGAGATGAACAAATAGAAGAACTTAGAAAAGGTGTAGATATCATAATTGCAACTCCTG
GAAGATTGAATGATTTTCAGATGAATAACTTCGTCAATCTGAAGAATATAACCTACTTGGTTTTAGATGAAGCTGACAGG
ATGTTAGACATGGGATTTGAGCCCCAGATAATGAAGATTTTGTTAGATGTGCGCCCAGACAGGCAGACAGTTATGACCAG
TGCTACATGGCCACGTTCTGTTCATCGCCTTGCACAATCTTATTTGAAAGAGCCAATGCTTGTCTATGTTGGTACATTGG
ATCTTGTTGCTGTAAGTTCAGTGAAACAAAATATAATTATAACCACCGAGGAAGAGAAATGGATTCACATACAAACTTTT
CTACAGAGTTTGTCAACCACAGACAAAGTCATAGTCTTTGTTTCTCGAAAAGCTGTCGCGGATCACTTATCAAGTGAGCT
AATACTTGGAAATATGTCAATAGAGTCTCTGCATGGAGATAGAGAACAGAGAGATCGAGAAAAAGCATTAGAGAACTTTA
AAACAGGCAAAGTGAGAATACTAATTGCAACTGATCTAGCCTCTAGAGGGCTTGATGTCCACGATATTACACATGTCTAC
AATTTTGACTTTCCACGGAACATTGAAGAATATGTACACAGAATAGGGCGCACAGGAAGAGCAGGGAGGACTGGTGTTTC
CATTACAACTATGACTAGAAATGATTGGAGGTTTGCCCCTGAATTGGTTAATATTCTGCAAAGAGCAAATCAGATTATTC
CTGACGACCTTTTATCAATGGCTGAGAGGTTCAAGGCACGTCAACAGAAAAGAGAAATGGAAAGAAAAATGGAAAAACCT
CAAGGAAGGCCCAAGAAGTTTCATTAA
ATGTCCCAACACGGAGAAGCCCCCAAGGCCTCTACATGGGTCGTTGCTGGCCGACGAAGTTCGACGGCGTCCCGGGCGCC
AGAAAGGAGGTTGGCGGAGGAGTTGAATCGAGGAGGTTCGGAGGGATATAGGGTCGTCAGAGGTGGCTGCTGGAGAGGTG
CCTCTAGGCCCCCGAACGCCGTGGCCGCTGGTCACAGGGAACCGCCGCTATGTTTTGCTTTGAAGAACCACTTTGTCGGC
GCGGTGATCGGTCGTGGTGGGTCGAAAATAAAGCATATACAAAATACAACAAACACCATAATCCAAATAATACAAGAAAG
ACCAGAATCATTTGTCAAAATATATGGCAGCAGAGCAATGCAAGGAAAAGCGAAAGCAGTGATAGATAATTTTGTGAAAA
AGCTAGAAGAAAATTCAGAATGCAGAGTTGTTGAAAAAACTAATCTGATAAAAATGTTTTTAACAGGTGTTGCCTTACAA
CCTTCTGTAGTTGCAGGAGCTCGGCCATTGATAGATTGGGATCAAATTAGAGAGGAAGGTTTGAAATGGCAGCAAAAAAA
GTGGGCAGATTTACCACCAATTAAGAAAAACTTTTATAAAGAGTCGGCTGCCACAAGTGCGATGTCCAAAGTACAAGCAG
ATAGTTGGAGGAAAGAAAATTTTAATATAACATGGGATGACTTGAAGGATGGGGAGAAACGACCTATCCCCAATCCAACC
TGTACATTTGATGACGCGTTTCATTACTATCCTGAGGTTATGGAAAACATTAAAAAATCAGGTTTTAAAAAGCCAACACC
TATTCAGGCACAAGCATGGCCCATTGTGTTGCAAGGAATAGATCTTATAGGAGTAGCCCAAACTGGAACAGGGAAGACAT
TGTGTTATTTAATGCCTGGATTTATTCATTTGGACCTTCAACCAACCTTTAAAGGTCAAAGGAATAGACCCGGCATGTTA
GTTCTAACTCCCACTAGGGAGTTAGCACTTCAAGTTGAAGGAGAATGTTGCAAATATTCATATAAAGGGCTTCGGAGTGT
TTGTGTATATGGTGGTGGAAACAGAGATGAACAAATAGAAGAACTTAGAAAAGGTGTAGATATCATAATTGCAACTCCTG
GAAGATTGAATGATTTTCAGATGAATAACTTCGTCAATCTGAAGAATATAACCTACTTGGTTTTAGATGAAGCTGACAGG
ATGTTAGACATGGGATTTGAGCCCCAGATAATGAAGATTTTGTTAGATGTGCGCCCAGACAGGCAGACAGTTATGACCAG
TGCTACATGGCCACGTTCTGTTCATCGCCTTGCACAATCTTATTTGAAAGAGCCAATGCTTGTCTATGTTGGTACATTGG
ATCTTGTTGCTGTAAGTTCAGTGAAACAAAATATAATTATAACCACCGAGGAAGAGAAATGGATTCACATACAAACTTTT
CTACAGAGTTTGTCAACCACAGACAAAGTCATAGTCTTTGTTTCTCGAAAAGCTGTCGCGGATCACTTATCAAGTGAGCT
AATACTTGGAAATATGTCAATAGAGTCTCTGCATGGAGATAGAGAACAGAGAGATCGAGAAAAAGCATTAGAGAACTTTA
AAACAGGCAAAGTGAGAATACTAATTGCAACTGATCTAGCCTCTAGAGGGCTTGATGTCCACGATATTACACATGTCTAC
AATTTTGACTTTCCACGGAACATTGAAGAATATGTACACAGAATAGGGCGCACAGGAAGAGCAGGGAGGACTGGTGTTTC
CATTACAACTATGACTAGAAATGATTGGAGGTTTGCCCCTGAATTGGTTAATATTCTGCAAAGAGCAAATCAGATTATTC
CTGACGACCTTTTATCAATGGCTGAGAGGTTCAAGGCACGTCAACAGAAAAGAGAAATGGAAAGAAAAATGGAAAAACCT
CAAGGAAGGCCCAAGAAGTTTCATTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 1 .55 RPM |
| SRP051959_skeletal_muscle | 0 .26 RPM |
| SRP051959_lymph_node | 0 .96 RPM |
| SRP051959_lung | 1 .59 RPM |
| SRP051959_liver | 0 .41 RPM |
| SRP051959_kidney | 0 .40 RPM |
| SRP051959_heart | 0 .63 RPM |
| SRP051959_colon | 0 .82 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000007851 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000012876 | within_species_paralog | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000018844 | within_species_paralog | 1 retrogene | |
| Equus caballus | ENSECAG00000017971 | ortholog_one2one | 1 retrogene | |
| Felis catus | ENSFCAG00000031631 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000080007 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000016092 | ortholog_one2one | 1 retrogene | |
| Microcebus murinus | ENSMICG00000017145 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000018546 | ortholog_one2many | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000004342 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000001209 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000006338 | ortholog_one2many | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000013660 | ortholog_one2one | 1 retrogene | |
| Procavia capensis | ENSPCAG00000005962 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000016774 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000018344 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_3639 | 66.39 | 74.85 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_3640 | 65.43 | 74.85 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000009966 retrocopies