Parental gene:

PRPF3, ENSCJAG00000009926

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:18:4300346..4335574(+)


>ENSCJAG00000009926
ATGGCATTGTCTAAGAGGGAGCTGGATGAGCTGAAACCATGGATAGAGAAGACAGTGAAGAGGGTGCTGGGTTTCTCAGA
GCCTACAGTGGTCACAGCAGCATTGAACTGTGTGGGGAAGGGCATGGACAAGAAAAAGGCGGCTGATCATCTGAAACCTT
TTCTTGATGATTCTACTCTGCGATTTGTGGACAAACTGTTTGAGGCTGTGGAGGAAGGCCGAAGCTCTAGGCATTCCAAG
TCTAGCAGTGACAGGAGCAGAAAACGAGAGCTAAAGGAGGTGTTTGGTGATGACTCTGAGATCTCTAAGGAATCATCAGG
AGTAAAGAAGCGACGAATACCCCGTTTTGAGGAGGTGGAAGAAGAGCCAGAGGTGATTCCTGGACCTCCATCAGAGAGCC
CTGGCATGCTGACTAAGCTCCAGATCAAACAGATGATGGAGGCAGCAACACGACAAATTGAGGAGAGGAAAAAGCAGCTG
AGCTTCATTAGCCCGCCTACACCTCAGCCAAAGACTCCTTCTTCCTCCCAACCAGAGCGACTTCCAATTGGCAACACTAT
TCAACCCTCCCAGGCTGCCACTTTCATGAATGATGCCATTGAGAAGGCAAGGAAAGCAGCTGAACTACAAGCTCGAATCC
AAGCCCAGCTGGCACTGAAGCCAGGACTCATTGGCAATGCCAACATGGTGGGCCTGGCTAATCTCCATGCCATGGGCATT
GCTCCCCCGAAGGTGGAGTTAAAAGACCAAACTAAACCCACACCACTGATCCTAGATGAGCAAGGGCGCACTGTAGATGC
AACAGGCAAGGAGATTGAGCTGACACACCGCATGCCTACTCTGAAGGCCAATATTCGTGCTGTGAAGAGGGAACAATTCA
AGCAACAGCTAAAGGAAAAGCCATCAGAAGACATGGAGTCCAATACCTTTTTTGACCCCCGAGTCTCCATTGCCCCTTCC
CAGCGCCAGAGACGCACTTTTAAATTCCATGACAAGGGCAAATTTGAGAAGATTGCTCAGCGATTACGGACAAAGGCTCA
ACTGGAGAAGCTACAGGCAGAGATTTCACAAGCAGCTCGAAAAACAGGCATACATACTTCGACTAGGCTTGCCCTCATTG
CTCCTAAGAAGGAGCTAAAGGAAGGAGATATCCCTGAAATTGAGTGGTGGGACTCTTACATAATCCCCAATGGCTTTGAT
CTTACAGAGGAAAATCCCAAGAGAGAAGATTATTTTGGAATCACAAATCTTGTTGAACATCCAGCCCAACTCAATCCTCC
AGTTGACAATGATACACCAGTTACGCTGGGAGTATATCTTACCAAGAAGGAACAGAAAAAACTTCGGAGACAAACAAGGA
GGGAAGCACAGAAAGAACTACAAGAAAAAGTCAGGCTGGGCCTAATGCCTCCTCCAGAACCCAAAGNAGTGAGAATTTCT
AATTTGATGCGAGTATTAGGAACAGAAGCTGTTCAAGACCCCACGAAGGTAGAAGCCCATGTCCGAGCTCAGATGGCAAA
AAGGCAGAAAGCGCATGAAGAGGCCAACGCTGCCCGAAAGCTCACGGCAGAACAGAGAAAGGTCAAGAAAATTAAAAAGC
TTAAAGAAGACATTTCACAGGGGGTACACATATCTGTATATAGAGTGCGAAATTTGAGCAACCCAGCCAAGAAGTTCAAG
ATTGAGGCCAATGCTGGGCAACTGTACCTGACAGGGGTGGTGGTACTGCACAAGGATGTCAACGTGGTAGTAGTGGAAGG
GGGCCCCAAGGCCCAGAAGAAATTTAAGCGTCTTATGCTGCATCGGATAAAGTGGGATGAACAGACATCTAACACGAAGG
GAGATGATGATGAGGAATCTGATGAGGAAGCTGTGAAGAAAACCAACAAATGTGTACTAGTCTGGGAGGGTACAGCCAAA
GACCGGAGTTTTGGAGAGATGAAGTTTAAACAGTGTCCTACAGAGAACATGGCTCGTGAGCATTTCAAAAAGCATGGGGC
TGAACACTACTGGGACCTTGCGCTGAGTGAATCTGTGTTAGAGTCCACTGACTGA

Library Parental gene expression (RPM)
SRP051959_spleen 31 .60 RPM
SRP051959_skeletal_muscle 20 .05 RPM
SRP051959_lymph_node 35 .41 RPM
SRP051959_lung 33 .25 RPM
SRP051959_liver 22 .53 RPM
SRP051959_kidney 22 .03 RPM
SRP051959_heart 19 .94 RPM
SRP051959_colon 18 .57 RPM



Species Parental gene accession Homology type Retrogenes number
Macaca mulatta ENSMMUG00000016301 ortholog_one2one 1 retrogene
retro_mmul_2348,
Nomascus leucogenys ENSNLEG00000009841 ortholog_one2one 1 retrogene
retro_nleu_2529,
Otolemur garnettii ENSOGAG00000005352 ortholog_one2one 4 retrogenes
retro_ogar_2360, retro_ogar_3052, retro_ogar_374, retro_ogar_409,
Pan troglodytes ENSPTRG00000001254 ortholog_one2one 1 retrogene
retro_ptro_2758,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1499 84.56 62.87
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Download FASTA sequences of all ENSCJAG00000009926 retrocopies