Parental gene:

CAPNS1, ENSCJAG00000009594

Aliases:None
Description:calpain, small subunit 1 [Source:HGNC Symbol;Acc:1481]
Organism:Marmoset (Callithrix jacchus)
Coordinates:22:29941612..29955449(+)


>ENSCJAG00000009594
ATGTTCCTGGTTAACTCGTTCTTGAAGGGCGGCGGCGGCAGCGGCGGCGGCAGCGGCGGCGGGGGAGGCGGGGGCCTGGG
TGGGGGCCTGGGGAATGTACTTGGAGGCCTGATCAGCGGGGCCGGGGGCGGCGGCGGCGGCGGCGGTGGAGGCGGAGGCG
GTGGAGGCGGCGGTGGCGGTGGAACGGCCATGCGCATCCTAGGCGGCGTTATCAGCGCCATCAGCGAGGCGGCTGCGCAG
TATAACCCGGAGCCCCCGCCTCCACGCACACATTACTCCAACATTGAGGCCAACGAAAGTGAGGAGGTCCGACAGTTCCG
GAGACTCTTTGCCCAGCTGGCTGGAGATGACATGGAGGTCAGTGCCACAGAACTCATGAACATTCTCAACAAGGTCGTGA
CACGACACCCTGATCTGAAGACTGATGGTTTTGGCATTGACACATGTCGCAGCATGGTGGCCGTGATGGATAGCGACACC
ACAGGCAAGTTGGGCTTCGAGGAATTCAAGTACTTGTGGAACAACATCAAAAGGTGGCAGGGCATATATAAACAGTTTGA
CACTGACCGGTCAGGAACCATCTGCAGCAGTGAACTCCCGGGGGCCTTTGAGGCAGCAGGGTTCCACCTGAACGAGCATC
TCTACAACATGATCATCAGACGCTACTCAGATGAAAGTGGGAACATGGATTTTGACAACTTCATCAGCTGCTTGGTCAGG
CTGGATGCCATGTTCCGTGCCTTCAAATCTCTTGACAAAGATGGCACTGGACAAATCCAGGTGAACATCCAGGAGGTAAG
AACCCCCATCTTGGGGTGTGGGTGTCTGGGGGGACCCCATCCCTCAGCCCTTCATACCCGTCCTGAGCTTCAGTCCCCTC
CCTCCTATTTTGCCAGCAGCCCCTGGGTGAGGACAGACGGGCTGGTGCTCGTGTTCCCTGTCCTCATTCTCTGCCCTCCT
CTCCCCAGTGGCTGCAGCTGA

Library Parental gene expression (RPM)
SRP051959_spleen 31 .66 RPM
SRP051959_skeletal_muscle 33 .43 RPM
SRP051959_lymph_node 32 .78 RPM
SRP051959_lung 61 .28 RPM
SRP051959_liver 27 .53 RPM
SRP051959_kidney 61 .10 RPM
SRP051959_heart 60 .83 RPM
SRP051959_colon 59 .82 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000000511 ortholog_one2one 1 retrogene
retro_acar_205,
Ailuropoda melanoleuca ENSAMEG00000001024 ortholog_one2one 1 retrogene
retro_amel_136,
Bos taurus ENSBTAG00000014872 ortholog_one2one 2 retrogenes
retro_btau_1126, retro_btau_692,
Canis familiaris ENSCAFG00000031314 ortholog_one2one 1 retrogene
retro_cfam_942,
Cavia porcellus ENSCPOG00000000115 ortholog_one2one 1 retrogene
retro_cpor_1131,
Equus caballus ENSECAG00000012210 ortholog_one2one 1 retrogene
retro_ecab_707,
Felis catus ENSFCAG00000014149 ortholog_one2one 1 retrogene
retro_fcat_1691,
Homo sapiens ENSG00000126247 ortholog_one2one 1 retrogene
retro_hsap_98,
Gorilla gorilla ENSGGOG00000003699 ortholog_one2one 2 retrogenes
retro_ggor_1241, retro_ggor_263,
Myotis lucifugus ENSMLUG00000024944 ortholog_one2one 1 retrogene
retro_mluc_2336,
Macaca mulatta ENSMMUG00000000249 ortholog_one2one 2 retrogenes
retro_mmul_1334, retro_mmul_1567,
Monodelphis domestica ENSMODG00000014179 ortholog_one2one 1 retrogene
retro_mdom_410,
Mustela putorius furo ENSMPUG00000005617 ortholog_one2one 1 retrogene
retro_mputfur_444,
Mus musculus ENSMUSG00000001794 ortholog_one2one 1 retrogene
retro_mmus_80,
Nomascus leucogenys ENSNLEG00000011712 ortholog_one2one 2 retrogenes
retro_nleu_1328, retro_nleu_992,
Ornithorhynchus anatinus ENSOANG00000002736 possible_ortholog 1 retrogene
retro_oana_113,
Pongo abelii ENSPPYG00000009898 ortholog_one2one 2 retrogenes
retro_pabe_1359, retro_pabe_448,
Pelodiscus sinensis ENSPSIG00000012793 ortholog_one2one 1 retrogene
retro_psin_45,
Pan troglodytes ENSPTRG00000010887 ortholog_one2one 2 retrogenes
retro_ptro_1112, retro_ptro_168,
Pteropus vampyrus ENSPVAG00000012885 ortholog_one2one 3 retrogenes
retro_pvam_1375, retro_pvam_639, retro_pvam_737,
Rattus norvegicus ENSRNOG00000045747 ortholog_one2many 2 retrogenes
retro_rnor_1447, retro_rnor_2145,
Sorex araneus ENSSARG00000004266 ortholog_one2one 1 retrogene
retro_sara_215,
Sus scrofa ENSSSCG00000030149 ortholog_one2one 2 retrogenes
retro_sscr_495, retro_sscr_73,
Ictidomys tridecemlineatus ENSSTOG00000026235 ortholog_one2one 1 retrogene
retro_itri_342,
Vicugna pacos ENSVPAG00000008074 ortholog_one2one 1 retrogene
retro_vpac_64,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2940 69.48 88.98
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Download FASTA sequences of all ENSCJAG00000009594 retrocopies