Parental gene:

MSMO1, ENSCJAG00000009301

Aliases:None
Description:methylsterol monooxygenase 1 [Source:HGNC Symbol;Acc:10545]
Organism:Marmoset (Callithrix jacchus)
Coordinates:3:25873222..26104686(-)


>ENSCJAG00000009301
ATGGCAACAAATGAAAGTGTCAGCATCTTTAGTTCAGCATCCTTGGCTGTGGAATATGTAGATTCACTTTTACCTGAGAA
TCCTTTGCAAGAACCATTTAAAAATGCTTGGAACTATATGTTGAATAATTATACAAAGTTCCAGATTGCAACATGGGGAT
CCCTTATAGTTCATGAAGCCATTTATTTCTTGTTCTGTGTACCTGGATTTTTATTTCAATTTATACCTTATATGAAAAAA
TACAAAATTCAAAAGGATAAACCAGAATCATTGGAAAGCCAATGGAAATGTTTCAAAGTTCTTCTCTTTAATCACTTCTG
TATTCAGCTACCTTTGATTTGCGGAACCTACTATTTTACAGAGTATTTCAATATTCCTTATGACTGGGAAAGAATGCCAA
GATGGTATTTGCTTTTGGCAAGATGCCTTGGCTGTGCAGTCATTGAAGATACTTGGCACTATTTTCTGCATAGACTCTTA
CACCACAAGAGAATATACAAGTATATTCATAAAGTTCATCATGAATTTCAGGCTCCATTTGGAATGGAAGCTGAATATGC
ACATCCTTTGGAAACTCTAATTCTTGGAACTGGATTTTTCATTGGAATCGTGCTTTTGTGTGATCATGTAATTCTTCTTT
GGGCATGGGTGACCATTCGTTTGATGGAAACTATTGATGTCCATAGTGGTTATTATATTCCTCTCAACCCTTTAAATTTC
ATCCCTTTCTATGCTGGTTCTCGGCATCATGATTTCCACCACATGAACTTCATCGGAAACTATGCTTCAACGTTTACATG
GTGGGATAGAATTTTTGGAACAGACTCTCAGTATCATGCCTATAATGAAAAGAGGAAGAAGTTGGAGAAAAAGACTGAAT
AA

Library Parental gene expression (RPM)
SRP051959_spleen 10 .13 RPM
SRP051959_skeletal_muscle 5 .74 RPM
SRP051959_lymph_node 14 .95 RPM
SRP051959_lung 13 .50 RPM
SRP051959_liver 326 .77 RPM
SRP051959_kidney 18 .68 RPM
SRP051959_heart 7 .07 RPM
SRP051959_colon 68 .09 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000005596 ortholog_one2one 1 retrogene
retro_amel_447,
Choloepus hoffmanni ENSCHOG00000007550 ortholog_one2many 2 retrogenes
retro_chof_1657, retro_chof_560,
Felis catus ENSFCAG00000023004 ortholog_one2one 1 retrogene
retro_fcat_863,
Homo sapiens ENSG00000052802 ortholog_one2one 1 retrogene
retro_hsap_4672,
Gorilla gorilla ENSGGOG00000015730 ortholog_one2one 1 retrogene
retro_ggor_2898,
Loxodonta africana ENSLAFG00000007061 ortholog_one2many 1 retrogene
retro_lafr_570,
Macaca mulatta ENSMMUG00000012994 ortholog_one2one 1 retrogene
retro_mmul_2486,
Nomascus leucogenys ENSNLEG00000006501 ortholog_one2one 1 retrogene
retro_nleu_2164,
Oryctolagus cuniculus ENSOCUG00000003769 ortholog_one2one 1 retrogene
retro_ocun_1454,
Otolemur garnettii ENSOGAG00000009281 ortholog_one2many 2 retrogenes
retro_ogar_182, retro_ogar_3404,
Pan troglodytes ENSPTRG00000016574 ortholog_one2one 1 retrogene
retro_ptro_3104,
Pteropus vampyrus ENSPVAG00000013707 ortholog_one2one 4 retrogenes
retro_pvam_1405, retro_pvam_550, retro_pvam_598, retro_pvam_784,
Sorex araneus ENSSARG00000013546 ortholog_one2one 1 retrogene
retro_sara_635,
Sarcophilus harrisii ENSSHAG00000000135 ortholog_one2one 1 retrogene
retro_shar_530,
Tursiops truncatus ENSTTRG00000012897 ortholog_one2many 2 retrogenes
retro_ttru_20, retro_ttru_801,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2245 78.53 54.27
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Download FASTA sequences of all ENSCJAG00000009301 retrocopies