RetrogeneDB ID:

retro_shar_530

Retrocopy
location
Organism:Tasmanian devil (Sarcophilus harrisii)
Coordinates:GL849833.1:1059401..1059765(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:MSMO1
Ensembl ID:ENSSHAG00000000135
Aliases:None
Description:methylsterol monooxygenase 1 [Source:HGNC Symbol;Acc:10545]


Retrocopy-Parental alignment summary:






>retro_shar_530
GAGACTTGGGAAGTCCAGCAGAAATAGCTCATAAAAATTCTCATCCATCACTTTTGCATTCATCTATCTTTGATTTGTGG
TACCTGGTATTTTACAGAATATTTTACCATTCCTTATGTTTGAGACAGATGTCAAAATGGCATGTGCTATCGGCTGGATG
TTTTGGCTATGCAGTGATTGAAGACACCTGGCACTATTTCCTTCATAGACTTTTATATCATGTGTGTATCCATAAAGTTC
ATCATGAATTTTAGGCCCCAGTTGGAATGGAAGCTAAATATGCACACCCTCTTAAAGCCCTCATTCTTCAGACTTTTTTA
TTGAAATTTTGCTCTTTTATGACCACATAGTCCTCCATTGGGCA

ORF - retro_shar_530 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 60.9 %
Parental protein coverage: 71.58 %
Number of stop codons detected: 3
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalETWEGQWKCFKVILFNHFFIQLPLICGTWYFTEYFDIPYDWD-SMPRWYVERHMLLARCFGCAVIEDTWH
ETWE.Q.K....IL..HF.I.L.LICGTWYFTEYF.IPY..D..M..W.V....L.A.CFG.AVIEDTWH
RetrocopyETWEVQQK*LIKILIHHFCIHLSLICGTWYFTEYFTIPYV*D<QMSKWHV----LSAGCFGYAVIEDTWH
ParentalYFLHRLLHHKKIYKYIHKVHHEFQAPFGMEAEYAHPLETLILGTGFFIGILIFC-DHVALLWA
YFLHRLL.H..I.K....VHHEF.AP.GMEA.YAHPL..LIL.T.F......F..DH..L.WA
RetrocopyYFLHRLLYHVCIHK----VHHEF*APVGMEAKYAHPLKALILQT-FLLKFCSFM<DHIVLHWA

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Sarcophilus harrisii was not studied using RNA-Seq expression data.