Parental gene:

KRTCAP2, ENSCJAG00000009017

Aliases:None
Description:keratinocyte associated protein 2 [Source:HGNC Symbol;Acc:28942]
Organism:Marmoset (Callithrix jacchus)
Coordinates:18:9169525..9173811(-)


>ENSCJAG00000009017
ATGCGCATAGCTAACCGTACCTGGTTTGGGTCCGCTTTCTTGGCCAGAGGCGCCGATTGGACTCACAGGCGGGGAATGAT
GGTGGTGGGTACAGGCACCTCGCTGGCGCTGTCCTCCCTCCTGTCCCTGCTGCTCTTCGCTGGGATGCAGATGTACAGCC
GTCAGCTGGCCTCCACCGAGTGGCTCACCATCCAGGGCGGCCTGCTTGGCTCGGGCCTCTTCGTGTTCTCCCTCACTGCC
TTCAATAATCTGGAGAATCTTGTCTTCGGCAAAGGATTCCAAGCAAAGATCTTCCCTGAGATTCTGCTGTGCCTCCTGTT
GGCTCTCTTTGCATCTGGCCTCATCCACCGAGTCTGTGTCACCACCTGCTTCATCTTCTCCATGGTTGGTCTGTACTATA
TCAACAAGATCTCCTCCACCCTGTACCAGGCAGCAGCTCCAGTCCTCACACCAGCCAAGGTCACAGGCAAGAGCAAGAAG
AGAAATTGA

Library Parental gene expression (RPM)
SRP051959_spleen 7 .39 RPM
SRP051959_skeletal_muscle 8 .56 RPM
SRP051959_lymph_node 6 .80 RPM
SRP051959_lung 7 .13 RPM
SRP051959_liver 7 .56 RPM
SRP051959_kidney 8 .12 RPM
SRP051959_heart 5 .75 RPM
SRP051959_colon 6 .43 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011336 ortholog_one2one 1 retrogene
retro_amel_1789,
Canis familiaris ENSCAFG00000017055 ortholog_one2one 1 retrogene
retro_cfam_1487,
Felis catus ENSFCAG00000025085 ortholog_one2one 3 retrogenes
retro_fcat_1496, retro_fcat_477, retro_fcat_576,
Homo sapiens ENSG00000163463 ortholog_one2one 1 retrogene
retro_hsap_2100,
Gorilla gorilla ENSGGOG00000009303 ortholog_one2one 1 retrogene
retro_ggor_1635,
Macaca mulatta ENSMMUG00000012180 ortholog_one2one 2 retrogenes
retro_mmul_745, retro_mmul_987,
Mustela putorius furo ENSMPUG00000005647 ortholog_one2one 1 retrogene
retro_mputfur_1653,
Nomascus leucogenys ENSNLEG00000011864 ortholog_one2one 1 retrogene
retro_nleu_1306,
Oryctolagus cuniculus ENSOCUG00000000347 ortholog_one2many 1 retrogene
retro_ocun_157,
Otolemur garnettii ENSOGAG00000030271 ortholog_one2one 1 retrogene
retro_ogar_1306,
Pongo abelii ENSPPYG00000000756 ortholog_one2one 1 retrogene
retro_pabe_1999,
Pan troglodytes ENSPTRG00000001410 ortholog_one2one 1 retrogene
retro_ptro_1541,
Rattus norvegicus ENSRNOG00000020542 ortholog_one2one 1 retrogene
retro_rnor_2128,
Ictidomys tridecemlineatus ENSSTOG00000008829 ortholog_one2many 1 retrogene
retro_itri_1127,
Tarsius syrichta ENSTSYG00000013228 ortholog_one2one 2 retrogenes
retro_tsyr_1096, retro_tsyr_531,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1289 78.00 91.98
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Download FASTA sequences of all ENSCJAG00000009017 retrocopies