Parental gene:

ENSCJAG00000008695

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:15:76415649..76421759(-)


>ENSCJAG00000008695
ATGTCGTTCCCAAAGTATAAACCGTCGCGCCTAGCCACTCTGCCCCAGACCCTCGACCCAGCCGAATATGACATATCTCT
GGAAAGCCGGCGGGCGCAAGTCGAGCGGTTGGCCATTAGAGCCCGGCTGAAACGAGAGTACCTGCTTCAGTACAACGACC
CCAACCGCCGAGGACTCGTCGTAAATCCTGCCTTGGTTCGTTGGGCCTATGCAAGAGCAAACATCTATCCTAACTGCAGA
GCCACTCCTAAAAACTCACTCCTGGGAGCTGTGGTTGGATTTGGGCCTCTCATCTTGTGGTACTATATTCTCAAAACTGA
CAGGGATAAGAAAGAAAAACTTATCCAGGAAGGAAAATTGGATCGAACATTTAGTCTCTCATATTAA

Library Parental gene expression (RPM)
SRP051959_spleen 14 .98 RPM
SRP051959_skeletal_muscle 76 .59 RPM
SRP051959_lymph_node 13 .22 RPM
SRP051959_lung 15 .76 RPM
SRP051959_liver 33 .75 RPM
SRP051959_kidney 44 .68 RPM
SRP051959_heart 78 .65 RPM
SRP051959_colon 23 .87 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000011462 ortholog_one2many 1 retrogene
retro_acar_74,
Ailuropoda melanoleuca ENSAMEG00000004761 ortholog_one2many 2 retrogenes
retro_amel_1289, retro_amel_1491,
Bos taurus ENSBTAG00000015892 ortholog_many2many 2 retrogenes
retro_btau_184, retro_btau_995,
Choloepus hoffmanni ENSCHOG00000000006 ortholog_one2many 2 retrogenes
retro_chof_188, retro_chof_777,
Danio rerio ENSDARG00000019332 ortholog_one2many 1 retrogene
retro_drer_32,
Dasypus novemcinctus ENSDNOG00000024123 ortholog_one2many 4 retrogenes
retro_dnov_1290, retro_dnov_1833, retro_dnov_394, retro_dnov_486,
Homo sapiens ENSG00000065518 ortholog_one2many 6 retrogenes
retro_hsap_1378, retro_hsap_1729, retro_hsap_2238, retro_hsap_2656, retro_hsap_2926, retro_hsap_3103,
Gorilla gorilla ENSGGOG00000013923 ortholog_many2many 2 retrogenes
retro_ggor_1853, retro_ggor_2265,
Loxodonta africana ENSLAFG00000021459 ortholog_one2many 1 retrogene
retro_lafr_1078,
Microcebus murinus ENSMICG00000005226 ortholog_one2many 4 retrogenes
retro_mmur_1409, retro_mmur_1415, retro_mmur_882, retro_mmur_915,
Myotis lucifugus ENSMLUG00000027951 ortholog_one2many 3 retrogenes
retro_mluc_1433, retro_mluc_2010, retro_mluc_489,
Macaca mulatta ENSMMUG00000001592 ortholog_one2many 4 retrogenes
retro_mmul_1217, retro_mmul_1514, retro_mmul_1979, retro_mmul_356,
Monodelphis domestica ENSMODG00000018229 ortholog_one2many 1 retrogene
retro_mdom_1658,
Mustela putorius furo ENSMPUG00000008272 ortholog_many2many 1 retrogene
retro_mputfur_81,
Mus musculus ENSMUSG00000022820 ortholog_one2many 4 retrogenes
retro_mmus_1075, retro_mmus_1077, retro_mmus_1405, retro_mmus_1820,
Nomascus leucogenys ENSNLEG00000007706 ortholog_one2many 4 retrogenes
retro_nleu_134, retro_nleu_2889, retro_nleu_2989, retro_nleu_762,
Otolemur garnettii ENSOGAG00000005956 ortholog_one2many 5 retrogenes
retro_ogar_1454, retro_ogar_1917, retro_ogar_1922, retro_ogar_2874, retro_ogar_3091,
Pongo abelii ENSPPYG00000013503 ortholog_one2many 3 retrogenes
retro_pabe_1526, retro_pabe_2500, retro_pabe_2565,
Pan troglodytes ENSPTRG00000015270 ortholog_one2many 6 retrogenes
retro_ptro_1226, retro_ptro_1582, retro_ptro_1791, retro_ptro_1980, retro_ptro_2099, retro_ptro_947,
Rattus norvegicus ENSRNOG00000002721 ortholog_many2many 3 retrogenes
retro_rnor_275, retro_rnor_291, retro_rnor_99,
Sorex araneus ENSSARG00000012482 ortholog_one2many 1 retrogene
retro_sara_600,
Ictidomys tridecemlineatus ENSSTOG00000020092 ortholog_many2many 3 retrogenes
retro_itri_3, retro_itri_666, retro_itri_786,
Tarsius syrichta ENSTSYG00000006456 ortholog_one2many 7 retrogenes
retro_tsyr_1062, retro_tsyr_109, retro_tsyr_1617, retro_tsyr_1635, retro_tsyr_410, retro_tsyr_627, retro_tsyr_736,
Tursiops truncatus ENSTTRG00000016658 ortholog_one2many 1 retrogene
retro_ttru_625,
Vicugna pacos ENSVPAG00000003774 ortholog_one2many 1 retrogene
retro_vpac_251,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_302 93.39 94.53
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2. retro_cjac_1290 89.06 100.00
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3. retro_cjac_2140 54.26 99.22
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4. retro_cjac_3251 74.77 82.03
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Download FASTA sequences of all ENSCJAG00000008695 retrocopies