Parental gene: | ATP5G1, ENSCJAG00000007352 |
| Aliases: | None |
| Description: | ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) [Source:HGNC Symbol;Acc:841] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 5:108663269..108666496(-) |
>ENSCJAG00000007352
ATGCAGACCACCGGGGCATTACTCATTTCTCCGGCTCTGATCCGCTGTTGTACCAGGGGTCTAATCAGGCCTGTGTCTGC
CTCCTTCTTGAATAGCCCAGAGAATTCATCTAAACAGGAATGTTCCCCTTCCTCCAGCAGCTCCCCACTCCAGGTGGCCC
GACGGGAGTTCCAGACCAGTGTCGTCTCCCGGGACATTGACACAGCAGCCAAGTTTATTGGTGCTGGGGCAGCCACAGTT
GGTGTGGCTGGTTCAGGGGCTGGCATTGGAACAGTGTTTGGCAGCTTGATCATTGGCTATGCCAGGAATCCGTCTCTCAA
GCAGCAGCTCTTCTCCTACGCCATTCTGGGCTTTGCCCTGTCTGAGGCCATGGGGCTCTTCTGTTTGATGGTCGCCTTCC
TCATCCTCTTCGCCATGTGA
ATGCAGACCACCGGGGCATTACTCATTTCTCCGGCTCTGATCCGCTGTTGTACCAGGGGTCTAATCAGGCCTGTGTCTGC
CTCCTTCTTGAATAGCCCAGAGAATTCATCTAAACAGGAATGTTCCCCTTCCTCCAGCAGCTCCCCACTCCAGGTGGCCC
GACGGGAGTTCCAGACCAGTGTCGTCTCCCGGGACATTGACACAGCAGCCAAGTTTATTGGTGCTGGGGCAGCCACAGTT
GGTGTGGCTGGTTCAGGGGCTGGCATTGGAACAGTGTTTGGCAGCTTGATCATTGGCTATGCCAGGAATCCGTCTCTCAA
GCAGCAGCTCTTCTCCTACGCCATTCTGGGCTTTGCCCTGTCTGAGGCCATGGGGCTCTTCTGTTTGATGGTCGCCTTCC
TCATCCTCTTCGCCATGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 4 .08 RPM |
| SRP051959_skeletal_muscle | 26 .14 RPM |
| SRP051959_lymph_node | 3 .79 RPM |
| SRP051959_lung | 4 .07 RPM |
| SRP051959_liver | 11 .74 RPM |
| SRP051959_kidney | 11 .94 RPM |
| SRP051959_heart | 18 .93 RPM |
| SRP051959_colon | 10 .05 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Anolis carolinensis | ENSACAG00000006341 | ortholog_many2many | 1 retrogene | |
| Bos taurus | ENSBTAG00000018339 | possible_ortholog | 3 retrogenes | |
| Canis familiaris | ENSCAFG00000016880 | ortholog_one2many | 5 retrogenes | |
| Callithrix jacchus | ENSCJAG00000008207 | within_species_paralog | 3 retrogenes | |
| Cavia porcellus | ENSCPOG00000009017 | possible_ortholog | 2 retrogenes | |
| Equus caballus | ENSECAG00000019908 | ortholog_one2many | 1 retrogene | |
| Felis catus | ENSFCAG00000002344 | ortholog_one2many | 2 retrogenes | |
| Homo sapiens | ENSG00000159199 | ortholog_one2one | 8 retrogenes | |
| Gorilla gorilla | ENSGGOG00000001626 | ortholog_one2one | 8 retrogenes | |
| Loxodonta africana | ENSLAFG00000004537 | ortholog_one2many | 2 retrogenes | |
| Macropus eugenii | ENSMEUG00000005744 | ortholog_one2many | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000011738 | ortholog_one2many | 4 retrogenes | |
| Macaca mulatta | ENSMMUG00000013395 | ortholog_one2many | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000015341 | ortholog_one2many | 3 retrogenes | |
| Mus musculus | ENSMUSG00000006057 | possible_ortholog | 5 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000002718 | ortholog_one2one | 6 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000016225 | possible_ortholog | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000011713 | possible_ortholog | 3 retrogenes | |
| Pongo abelii | ENSPPYG00000008909 | ortholog_one2one | 9 retrogenes | |
| Pan troglodytes | ENSPTRG00000009364 | ortholog_one2one | 8 retrogenes | |
| Rattus norvegicus | ENSRNOG00000007235 | possible_ortholog | 5 retrogenes | |
| Sus scrofa | ENSSSCG00000017544 | possible_ortholog | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000013404 | ortholog_one2many | 2 retrogenes | |
| Tupaia belangeri | ENSTBEG00000003575 | ortholog_one2many | 5 retrogenes | |
| Tursiops truncatus | ENSTTRG00000008526 | possible_ortholog | 1 retrogene | |
| Vicugna pacos | ENSVPAG00000007653 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_161 | 79.41 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_289 | 91.18 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_679 | 94.59 | 53.68 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_1190 | 79.55 | 96.32 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cjac_1549 | 66.67 | 57.35 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_cjac_1878 | 75.59 | 88.49 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_cjac_4060 | 92.70 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000007352 retrocopies