Parental gene: | TFDP1, ENSCJAG00000006950 |
| Aliases: | None |
| Description: | transcription factor Dp-1 [Source:HGNC Symbol;Acc:11749] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 1:28903475..28931319(+) |
>ENSCJAG00000006950
TGTTTTCTGCAGGCCGGTCTAATTGAAGCCAACGGAGAACTCAAGGTCTTCATAGACCAGAACCTTAGTCCCGGAAAAGG
TGTGGTGTCCCTCGTGGCCGTTCACCCCTCCACTGTCAACCCACTTGGGAAGCAGCTCTTGCCAAAAACCTTTGGACAGT
CCAATGTCAACATTGCCCAGCAAGTGGTAATTGGTACGCCTCAGAGACCAGCAGCATCAAACACCCTCGTGGTAGGAAGC
CCACACACCCCCAGCACTCACTTTGCCTCTCAGAACCAGCCTTCCGACTCCTCACCTTGGTCTGCCGGGAAGCGCAACAG
GAAAGGAGAGAAGAATGGCAAGGGCCTGCGGCATTTCTCCATGAAGGTCTGCGAGAAGGTGCAGAGGANTGACAACCACA
TCTTACCAAACGAGTCAGCTTATGACCAGAAGAACATAAGACGGCGCGTCTACGATGCCTTAAACGTGCTGATGGCTATG
AACATCATCTCCAAGGAGAAGAAGGAGATCAAGTGGATTGGTCTGCCCACCAACTCGGCTCAGGAATGTCAGAACTTAGA
GGTGGAAAGACAGAGGAGACTTGAAAGAATAAAACAGAAACAGTCTCAACTTCAAGAACTTATTCTACAGCAAATTGCCT
TCAAGAACCTGGTGCAGAGAAACCGGCATGCAGAGCAGCAGGCCAGCCGGCCGCCGCCACCCAACTCGGTCATCCACCTG
CCCTTCATCATCGTCAACACCAGCAAGAAGACTGTCATTGACTGTAGCATCTCCAACGACAAATTCGAATATCTGTTTAA
TTTTGATAACACATTTGAAATCCACGATGACATAGAAGTGCTAAAGCGGATGGGCATGGCGTGCGGGCTGGAGTCCGGGA
GCTGCTCTGCCGAAGACCTTAAAATGGCCAGAAGTCTGGTCCCAAAGGCTCTGGAGCCATACGTGACAGAAATGGCTCAG
GGAACTGGAGGTGTGTTCATCACGACAGCAGGTTCCACATCTAACGGCACGAGGTTCTCCGCCAGTGACCTGACCAACGG
TGCAGATGGGATGCTGGCCACAAGCTCCAACGGGTCTCAGTACAGTGGCTCCAGGGTGGAGACCCCAGTGTCCTACGTCG
GGGAGGATGACGAGGATGACGATGACTTCAATGAGAATGACGAGGATGACTGA
TGTTTTCTGCAGGCCGGTCTAATTGAAGCCAACGGAGAACTCAAGGTCTTCATAGACCAGAACCTTAGTCCCGGAAAAGG
TGTGGTGTCCCTCGTGGCCGTTCACCCCTCCACTGTCAACCCACTTGGGAAGCAGCTCTTGCCAAAAACCTTTGGACAGT
CCAATGTCAACATTGCCCAGCAAGTGGTAATTGGTACGCCTCAGAGACCAGCAGCATCAAACACCCTCGTGGTAGGAAGC
CCACACACCCCCAGCACTCACTTTGCCTCTCAGAACCAGCCTTCCGACTCCTCACCTTGGTCTGCCGGGAAGCGCAACAG
GAAAGGAGAGAAGAATGGCAAGGGCCTGCGGCATTTCTCCATGAAGGTCTGCGAGAAGGTGCAGAGGANTGACAACCACA
TCTTACCAAACGAGTCAGCTTATGACCAGAAGAACATAAGACGGCGCGTCTACGATGCCTTAAACGTGCTGATGGCTATG
AACATCATCTCCAAGGAGAAGAAGGAGATCAAGTGGATTGGTCTGCCCACCAACTCGGCTCAGGAATGTCAGAACTTAGA
GGTGGAAAGACAGAGGAGACTTGAAAGAATAAAACAGAAACAGTCTCAACTTCAAGAACTTATTCTACAGCAAATTGCCT
TCAAGAACCTGGTGCAGAGAAACCGGCATGCAGAGCAGCAGGCCAGCCGGCCGCCGCCACCCAACTCGGTCATCCACCTG
CCCTTCATCATCGTCAACACCAGCAAGAAGACTGTCATTGACTGTAGCATCTCCAACGACAAATTCGAATATCTGTTTAA
TTTTGATAACACATTTGAAATCCACGATGACATAGAAGTGCTAAAGCGGATGGGCATGGCGTGCGGGCTGGAGTCCGGGA
GCTGCTCTGCCGAAGACCTTAAAATGGCCAGAAGTCTGGTCCCAAAGGCTCTGGAGCCATACGTGACAGAAATGGCTCAG
GGAACTGGAGGTGTGTTCATCACGACAGCAGGTTCCACATCTAACGGCACGAGGTTCTCCGCCAGTGACCTGACCAACGG
TGCAGATGGGATGCTGGCCACAAGCTCCAACGGGTCTCAGTACAGTGGCTCCAGGGTGGAGACCCCAGTGTCCTACGTCG
GGGAGGATGACGAGGATGACGATGACTTCAATGAGAATGACGAGGATGACTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 13 .34 RPM |
| SRP051959_skeletal_muscle | 8 .63 RPM |
| SRP051959_lymph_node | 18 .86 RPM |
| SRP051959_lung | 12 .27 RPM |
| SRP051959_liver | 19 .73 RPM |
| SRP051959_kidney | 11 .47 RPM |
| SRP051959_heart | 9 .00 RPM |
| SRP051959_colon | 13 .02 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000004467 | ortholog_one2many | 8 retrogenes | |
| Callithrix jacchus | ENSCJAG00000001950 | within_species_paralog | 1 retrogene | |
| Homo sapiens | ENSG00000198176 | ortholog_one2one | 4 retrogenes | |
| Gorilla gorilla | ENSGGOG00000004908 | ortholog_one2many | 2 retrogenes | |
| Loxodonta africana | ENSLAFG00000007927 | ortholog_many2many | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000012165 | ortholog_one2many | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000007423 | ortholog_one2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000038482 | ortholog_one2many | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000000849 | ortholog_one2one | 3 retrogenes | |
| Otolemur garnettii | ENSOGAG00000003532 | ortholog_one2many | 1 retrogene | |
| Pongo abelii | ENSPPYG00000025889 | ortholog_one2many | 3 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_179 | 64.38 | 98.17 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_4094 | 75.06 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000006950 retrocopies