Parental gene:

WDR92, ENSCJAG00000006498

Aliases:None
Description:calcineurin subunit B type 1 [Source:RefSeq peptide;Acc:NP_001257649]
Organism:Marmoset (Callithrix jacchus)
Coordinates:14:38700201..38822385(+)


>ENSCJAG00000006498
CAGATGGGCCTGCGGGTGCTGCACCGGGGTGATAGCAGTCCTGACAATTCTGTAGTGGATCCAAGACAGTACGCGGATGC
ACAGATACCTTTGACTGCCTCTAGCCCCAGGACTTGGATTTTTCCATTTTGTGTGTGTGTCCTCCAGGGAAATGAGGCAA
GTTATCCTTTGGAAATGTGCTCACACTTTGATGCGGATGAAATTAAAAGGCTAGGAAAGAGATTTAAGAAGCTTGATTTG
GACAATTCTGGTTCTTTGAGTGTGGAAGAGTTTATGTCTCTGCCTGAGTTACAACAGAATCCTTTAGTACAGCGAGTAAT
AGATATATTCGACACAGATGGGAATGGAGAAGTAGACTTTAAAGAATTCATTGAGGGAGTCTCTCAGTTCAGTGTCAAAG
GAGATAAGGAGCAGAAGTTGAGGTTTGCTTTCCGTATCTATGACATGGATAAAGATGGCTATATTTCCAATGGGGAACTC
TTCCAGGTATTGAAGATGATGGTGGGAAACAATCTGAAAGATACACAGTTACAGCAAATTGTAGACAAAACCATAATAAA
TGCAGATAAGGATGGAGATGGAAGAATATCCTTTGAAGAATTCTGTGCTAGGGGCGGGAAGACTGGCCTCTTCGCCGGCC
TGGCCTCTTCTGTGTCCATAAGGCCCGCATCCCCGCCCTCTCCCGCTGCGGACAGCTGTTCAGCCTGCCGTTTTTTCGCC
CGCCGGCCACCCTTGCGGGTGACCTGGGTAAAGCCGTCCTCTGCCCCGGCGCTCTGTGCTTCCATTTCGGATTCCAACCC
TGGGATTCTTAAAGCACTTCCGGCTGAAACACGTGCGCTGCTCCACAGCGCAGGAGCCAGCCTCTGCCAACCACCCCCGC
AGCTCCGCCCCTATCCTAAAACGCCACAGGCCGGGGACCTGCAGAATTTGGGGGCGTATGTATGTGTGCTAAAGACAGTG
GGTAAAGGCGATAAACAAATTCGTTTTGTTGTGAAGGAACATTCTATGCGATCGCAGGAGCGTATCTGGCATTATCCGGA
GATAACCACAGCCAACTTTCTAGGGCATCTGGGGCAGAGTACGGAAAGCAGGAGGGTCAAATTGCCCATGTTTGGAGTCT
GGTTTCCATTGGTGTTTTGGGGGGCTCTGGGTGTGGCGGTTGCCGGAGCTGAAATCGGCTGGACCATGTCGGCCTTCGAG
AAGCCTCAGATCATCGCCCATATCCAGAAGGGCTTCAACTACACGGTGTTTGACTGTAAGTGGGTGCCCTGCAGCGCCAA
ATTTGTGACCATGGGCAACTTCGCACGGGGCACCGGCGTCATTCAGCTGTACGAGATCCAGCACGGGGACCTGAAGCTGC
TTCGGGAGATTGAAAAGGCCAAACCTATTAAATGTGGAACATTTGGTGCAACATCTTTACAGCAGAGATATTTAGCTACT
GGAGATTTTGGTGGAAATGTTCATATATGGAATTTAGAAGCTCCAGAGATGCCAGTATATTCTGTAAAGGGCCATAAAGA
AATTATAAATGCAATAGATGGTGTAGGTGGACTAGGAATTGGAGAAGGAGCACCTGAAATTGTGACTGGCAGCCGCGATG
GTACTGTGAAGGTGTGGGACCCAAGGCAAAAAGATGATCCTGTTGCTAATATGGAACCTGTACAAGGAGAAAACAAGAGA
GACTGTTGGACTGTGGCATTTGGCAATGCTTATAATCAAGAAGAACGTGTTGTTTGTGCTGGCTATGACAATGGGGATAT
CAAACTATTTGATCTCAGAAATATGGCATTACGGTGGGAGACAAACATCAAAAATGGGGTATGTAGCTTGGAATTTGACA
GAAAAGACATAAGTATGAATAAGTTAGTAGCCACTTCTCTGGAAGCAAAGTTCCATGTTTTTGACATGAGAACACAGCAT
CCAACCAAAGGTTTTGCCTCTGTTTCAGAAAAGGCTCATAAATCTACTGTATGGCAGGTCCGACACCTGCCTCAGAACAG
GGAGCTCTTTCTGACAGCTGGGGGCGCCGGTGGCCTTCACCTCTGGAAGTATGAATACCCTATTCAGCGGTCAAAGAAAG
ATTCTGAGGGAATAGAGATGGGAGTCGCAGGTTCTGTAAGCCTTCTGCAGAACGTTACGTTGTCCACCCAGCCCATTTCA
AGTTTGGATTGGAGTCCAGATAAAAGGGGTCTCTGCGTCTGTAGCTCATTTGACCAAACGGTGAGAGTACTGATTGTTAC
AAAACTCCATAAAATTTGA

Library Parental gene expression (RPM)
SRP051959_spleen 26 .55 RPM
SRP051959_skeletal_muscle 20 .94 RPM
SRP051959_lymph_node 23 .04 RPM
SRP051959_lung 24 .03 RPM
SRP051959_liver 15 .94 RPM
SRP051959_kidney 18 .99 RPM
SRP051959_heart 18 .79 RPM
SRP051959_colon 19 .52 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000010619 ortholog_one2many 1 retrogene
retro_btau_1660,
Callithrix jacchus ENSCJAG00000020761 within_species_paralog 1 retrogene
retro_cjac_2396,
Dipodomys ordii ENSDORG00000019760 ortholog_one2one 1 retrogene
retro_dord_404,
Equus caballus ENSECAG00000009627 possible_ortholog 1 retrogene
retro_ecab_651,
Felis catus ENSFCAG00000028482 ortholog_one2many 1 retrogene
retro_fcat_1639,
Homo sapiens ENSG00000221823 ortholog_one2many 1 retrogene
retro_hsap_3,
Loxodonta africana ENSLAFG00000022682 ortholog_one2many 1 retrogene
retro_lafr_1014,
Macaca mulatta ENSMMUG00000017460 ortholog_one2one 1 retrogene
retro_mmul_1141,
Mustela putorius furo ENSMPUG00000006250 ortholog_one2many 1 retrogene
retro_mputfur_537,
Nomascus leucogenys ENSNLEG00000026538 ortholog_one2many 1 retrogene
retro_nleu_1049,
Oryctolagus cuniculus ENSOCUG00000027562 possible_ortholog 1 retrogene
retro_ocun_272,
Otolemur garnettii ENSOGAG00000034876 ortholog_one2many 1 retrogene
retro_ogar_1011,
Pan troglodytes ENSPTRG00000041941 ortholog_one2many 1 retrogene
retro_ptro_2909,
Rattus norvegicus ENSRNOG00000043210 ortholog_one2many 1 retrogene
retro_rnor_1932,
Sus scrofa ENSSSCG00000022362 possible_ortholog 1 retrogene
retro_sscr_86,
Ictidomys tridecemlineatus ENSSTOG00000025985 ortholog_one2many 1 retrogene
retro_itri_1569,
Tarsius syrichta ENSTSYG00000019531 possible_ortholog 2 retrogenes
retro_tsyr_326, retro_tsyr_41,
Tursiops truncatus ENSTTRG00000021395 ortholog_one2many 1 retrogene
retro_ttru_382,
Vicugna pacos ENSVPAG00000015522 possible_ortholog 1 retrogene
retro_vpac_3,
Drosophila melanogaster FBgn0015614 ortholog_one2many 1 retrogene
retro_dmel_53,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_624 82.14 98.82
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Download FASTA sequences of all ENSCJAG00000006498 retrocopies