Parental gene: | TDP2, ENSCJAG00000006074 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 4:3755345..3904455(+) |
>ENSCJAG00000006074
ATGGAGCTCGGCGGCTGCCTGGAGGGCGGGACAGAGGCGGCGGGGGAAGAGGGCGAGCCCGCGGTGAAGAAGCGGCGACT
TCTGTGTTTGGAGTTTGCCTCGGTCGCGAACTGCGATTCCGCTGTGGCTCAGTGCTACCTGGCCGAGAACGACTGGGAGA
TGGAAAGGGCACTGAACTCCTACTTCGAGCCTCCGGTGGAGGAGAGCGCCTTGGAACGCCGTCCTGAAACCACCGCCGAG
CCCAGGATCTATGTTGACCTAACCAATGAAGAAACAACGGATTCTACCAGTTCTAAAATCAGCCCATCTGAAGATACTCA
ACAAGAAAATGGCAGCATGTTCTCTCTCATGACCTGGAATGTTGATGGATTAGATCTAAACAATCTGGCAGAGAGGGCTC
GAGGGGTGTGTTCCTATTTAGTTTTGTACAGCCCAGATGTGGTCTTCCTACAGGAAGTTATTCCCCCATATTGTAGCTAC
CTAAAGAAGAGAGCAAAAAATTATGAGATTATTACAGGTCATGAAGAAGGATATTTCACAGCTATAATGTTGAAGAAATC
AAGAGTGAAATTAAAAAGCCAAGAGATTATTCCTTTTCCAAGTACCAACATGATGAGAAACCTTTTGTGTGTGCATGTGA
ATGTGTCAGGAAATGAGCTTTGTCTTATGACATCCCATTTGGAGAGCACCAAAGGGCATGCTAAGGAACGAATGAATCAG
TTAAAAATAGTTTTAAAGAAAATGCAAGAGGCTCCAGAGTCAGCAACAGTTATATTTGCAGGAGATACAAATCTAAGGGA
TCAAGAGGTTACCAAATGTGGTGGTTTACCCAGCAACATCGTGGATGTCTGGGAGTTGTTGGGCAAACCTAAACATTGCC
AGTATACATGGGATACACAGATGAACTCTAATCTTGGAATAACTGCTGCTTGTAAGCTTCGTTTTGACCGAATATTTTTC
AGAGCAGCAGCAGAAGAGGGACACATTATTCCCCGAAGTTTGGACCTTCTTGGATTGGAAAAACTGGACTGTGGTAGATT
TCCTAGTGATCACTGGGGTCTTCTGTGCAACTTAGATATAATACTGTAA
ATGGAGCTCGGCGGCTGCCTGGAGGGCGGGACAGAGGCGGCGGGGGAAGAGGGCGAGCCCGCGGTGAAGAAGCGGCGACT
TCTGTGTTTGGAGTTTGCCTCGGTCGCGAACTGCGATTCCGCTGTGGCTCAGTGCTACCTGGCCGAGAACGACTGGGAGA
TGGAAAGGGCACTGAACTCCTACTTCGAGCCTCCGGTGGAGGAGAGCGCCTTGGAACGCCGTCCTGAAACCACCGCCGAG
CCCAGGATCTATGTTGACCTAACCAATGAAGAAACAACGGATTCTACCAGTTCTAAAATCAGCCCATCTGAAGATACTCA
ACAAGAAAATGGCAGCATGTTCTCTCTCATGACCTGGAATGTTGATGGATTAGATCTAAACAATCTGGCAGAGAGGGCTC
GAGGGGTGTGTTCCTATTTAGTTTTGTACAGCCCAGATGTGGTCTTCCTACAGGAAGTTATTCCCCCATATTGTAGCTAC
CTAAAGAAGAGAGCAAAAAATTATGAGATTATTACAGGTCATGAAGAAGGATATTTCACAGCTATAATGTTGAAGAAATC
AAGAGTGAAATTAAAAAGCCAAGAGATTATTCCTTTTCCAAGTACCAACATGATGAGAAACCTTTTGTGTGTGCATGTGA
ATGTGTCAGGAAATGAGCTTTGTCTTATGACATCCCATTTGGAGAGCACCAAAGGGCATGCTAAGGAACGAATGAATCAG
TTAAAAATAGTTTTAAAGAAAATGCAAGAGGCTCCAGAGTCAGCAACAGTTATATTTGCAGGAGATACAAATCTAAGGGA
TCAAGAGGTTACCAAATGTGGTGGTTTACCCAGCAACATCGTGGATGTCTGGGAGTTGTTGGGCAAACCTAAACATTGCC
AGTATACATGGGATACACAGATGAACTCTAATCTTGGAATAACTGCTGCTTGTAAGCTTCGTTTTGACCGAATATTTTTC
AGAGCAGCAGCAGAAGAGGGACACATTATTCCCCGAAGTTTGGACCTTCTTGGATTGGAAAAACTGGACTGTGGTAGATT
TCCTAGTGATCACTGGGGTCTTCTGTGCAACTTAGATATAATACTGTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 10 .36 RPM |
| SRP051959_skeletal_muscle | 3 .41 RPM |
| SRP051959_lymph_node | 9 .38 RPM |
| SRP051959_lung | 10 .15 RPM |
| SRP051959_liver | 8 .79 RPM |
| SRP051959_kidney | 11 .91 RPM |
| SRP051959_heart | 4 .58 RPM |
| SRP051959_colon | 9 .34 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000012012 | ortholog_one2many | 2 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000010113 | ortholog_one2many | 1 retrogene | |
| Ochotona princeps | ENSOPRG00000016299 | ortholog_one2many | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_363 | 98.90 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000006074 retrocopies