Parental gene:

ENSCJAG00000003060

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:3:52561770..52701438(-)


>ENSCJAG00000003060
ATGCGCAGGCGTATATTTTCGAGTCAGGATTGGCGGGTGAGGGGCCGGGATGAGGCGGGACTCTTCTTTCGGCGCACGTT
CTGTGGCCGGAGTGGGCGGAGCTGCCGGTGTCAGTTGGTCCAAGTGTCCCCGCCCGAGGTGTCGGCTGCATCCTTCTCTC
TCCCGGCCCCTCCAGCAGAAGACCATTCAGCAAGGATTTTTTATCGAAGGCCCAAAAGTTTGTTACCCAAGATGATGAAT
GCTGACATGGATGCAGTTGATGCTGAAAATCAGGTGGAACTGGAGGAAAAAACAAGACTTATTAATCAAGTGTTGGAACT
CCAACACACACTTGAAGATCTGTCTGCAAGAGTAGATGCAGTTAAGGAAGAAAATCTGAAGCTAAAATCAGAAAACCAAG
TTCTTGGACAATATATAGAAAACCTCATGTCAGCTTCTAGTGTTTTTCAAACAACTGACACAAAAAGCAAAAGAAAGTAA

Library Parental gene expression (RPM)
SRP051959_spleen 15 .19 RPM
SRP051959_skeletal_muscle 9 .02 RPM
SRP051959_lymph_node 9 .00 RPM
SRP051959_lung 11 .75 RPM
SRP051959_liver 13 .04 RPM
SRP051959_kidney 20 .90 RPM
SRP051959_heart 13 .73 RPM
SRP051959_colon 19 .26 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000010957 ortholog_many2many 2 retrogenes
retro_amel_176, retro_amel_725,
Bos taurus ENSBTAG00000022109 ortholog_one2many 2 retrogenes
retro_btau_1843, retro_btau_1847,
Canis familiaris ENSCAFG00000003699 ortholog_one2many 2 retrogenes
retro_cfam_1564, retro_cfam_667,
Choloepus hoffmanni ENSCHOG00000000604 ortholog_one2many 10 retrogenes
retro_chof_1154, retro_chof_1651, retro_chof_1973, retro_chof_1980, retro_chof_2214, retro_chof_2394, retro_chof_2595, retro_chof_289, retro_chof_563, retro_chof_862,
Dipodomys ordii ENSDORG00000000177 ortholog_one2many 8 retrogenes
retro_dord_359, retro_dord_461, retro_dord_476, retro_dord_578, retro_dord_634, retro_dord_639, retro_dord_712, retro_dord_724,
Erinaceus europaeus ENSEEUG00000011107 ortholog_many2many 1 retrogene
retro_eeur_19,
Homo sapiens ENSG00000153130 ortholog_one2many 2 retrogenes
retro_hsap_1347, retro_hsap_228,
Gorilla gorilla ENSGGOG00000028186 ortholog_one2many 2 retrogenes
retro_ggor_1048, retro_ggor_291,
Macropus eugenii ENSMEUG00000014534 ortholog_one2many 2 retrogenes
retro_meug_1580, retro_meug_823,
Macaca mulatta ENSMMUG00000022351 ortholog_one2many 1 retrogene
retro_mmul_2186,
Monodelphis domestica ENSMODG00000025528 ortholog_one2many 2 retrogenes
retro_mdom_1163, retro_mdom_1265,
Mustela putorius furo ENSMPUG00000016119 ortholog_one2many 2 retrogenes
retro_mputfur_468, retro_mputfur_708,
Mus musculus ENSMUSG00000063253 possible_ortholog 2 retrogenes
retro_mmus_1639, retro_mmus_2306,
Nomascus leucogenys ENSNLEG00000005081 ortholog_one2many 2 retrogenes
retro_nleu_1830, retro_nleu_849,
Oryctolagus cuniculus ENSOCUG00000006591 ortholog_many2many 3 retrogenes
retro_ocun_1400, retro_ocun_1657, retro_ocun_429,
Otolemur garnettii ENSOGAG00000026414 ortholog_one2many 2 retrogenes
retro_ogar_2489, retro_ogar_3043,
Procavia capensis ENSPCAG00000003165 ortholog_one2many 2 retrogenes
retro_pcap_119, retro_pcap_457,
Pongo abelii ENSPPYG00000015077 ortholog_one2many 2 retrogenes
retro_pabe_1119, retro_pabe_423,
Pan troglodytes ENSPTRG00000016460 ortholog_one2many 2 retrogenes
retro_ptro_198, retro_ptro_922,
Rattus norvegicus ENSRNOG00000003853 possible_ortholog 1 retrogene
retro_rnor_609,
Sarcophilus harrisii ENSSHAG00000003474 ortholog_one2many 1 retrogene
retro_shar_572,
Ictidomys tridecemlineatus ENSSTOG00000028529 ortholog_one2many 3 retrogenes
retro_itri_1170, retro_itri_357, retro_itri_451,
Tarsius syrichta ENSTSYG00000011814 ortholog_many2many 6 retrogenes
retro_tsyr_1232, retro_tsyr_1446, retro_tsyr_1566, retro_tsyr_2025, retro_tsyr_34, retro_tsyr_446,
Tursiops truncatus ENSTTRG00000010677 ortholog_one2many 1 retrogene
retro_ttru_123,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_95 95.83 75.47
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2. retro_cjac_713 68.29 76.10
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Download FASTA sequences of all ENSCJAG00000003060 retrocopies