Parental gene: | SF1, ENSCJAG00000002780 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 11:120370582..120385380(-) |
>ENSCJAG00000002780
ATGGCGACCGGAGCGAACGCCACGCCGCTGGACTTCCCAAGTAAGAAGCGGAAGAGGAGCCGCTGGAACCAAGACACAAT
GGAACAAAAGACAGTGATTCCGGGAATGCCTACAGTTATTCCCCCTGGACTTACTCGAGAACAAGAAAGAGCTTACATAG
TGCAACTGCAGATAGAAGACCTGACTCGTAAACTGCGCACAGGAGACCTGGGCATCCCCCCTAACCCTGAGGACAGGTCC
CCTTCCCCTGAGCCCATCTACAATAGTGAGGGGAAGCGGCTTAATACCCGAGAGTTCCGCACCCGCAAAAAGCTGGAAGA
GGAGCGGCACAACCTCATCACTGAGATGGTTGCACTCAACCCGGATTTTAAGCCACCTGCAGATTACAAACCTCCAGCAA
CACGTGTGAGTGATAAAGTCATGATTCCACAAGATGAATACCCAGAAATCAACTTTGTGGGGCTGCTCATTGGGCCCAGA
GGGAACACCCTAAAGAACATAGAGAAGGAGTGCAATGCCAAGATTATGATCCGGGGGAAAGGATCTGTGAAAGAAGGGAA
GGTTGGGCGCAAAGATGGCCAGATGTTGCCAGGAGAAGATGAGCCACTTCATGCCCTGGTCACCGCCAATACAATGGAGA
ACGTCAAAAAGGCAGTGGAACAGATAAGAAACATCTTGAAGCAGGGTATCGAGACCCCAGAAGACCAGAATGATCTACGG
AAGATGCAGCTTCGGGAGTTGGCTCGCTTGAATGGGACCCTTCGGGAAGATGACAACAGGATCTTAAGACCTTGGCAGAG
TTCAGAGACCCGCAGCATTACCAACACCACGGTGTGTACCAAGTGTGGAGGGGCTGGCCACATCGCTTCAGACTGCAAAT
TCCAAAGGCCTGGTGATCCCCAGTCAGCTCAGGATAAAGCACGGATGGATAAAGAATATTTGTCCCTCATGGCTGAACTG
GGTGAAGCGCCCGTCCCAGCATCTGTGGGCTCCACCTCTGGGCCTGCCACCACACCCCTGGCCAGTGCACCTCGTCCTGC
TGCTCCCGCCAACAACCCACCTCCGCCGTCTCTCATGTCCACCACTCAGAGTCGCCCACCCTGGATGAATTCTGGCCCTT
CAGAGAGTCGGCCTTACCATGGCATGCACGGAGGTGGTCCTGGTGGGCCCGGAGGCGGCCCCCACAGCTTCCCACACCCG
TTACCCAGCCTGACAGGTGGGCATGGTGGACATCCCATGCAGCACAACCCCAATGGACCCCCACCCCCTTGGATGCAGCC
ACCACCACCTCCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGGATCAGTACCTGGGAAGTA
CGCCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAGGTATGATGCCGCCACCGCCTATGGGCATGATGCCGCCG
CCGCCTCCGCCTCCCAGTGGGCAGCCCCCGCCCCCTCCCTCTGGTCCTCTTCCCCCATGGCAACAGCAGCAGCAGCAGCC
TCCGCCACCCCCTCCGCCCAGCAGCAGTATGGCTTCCAGTACCCCCTTGCCATGGCAGCAAAATACGACGACTACCACCA
CGAGCGCTGGCACAGGGTCCATCCCGCCATGGCAACAGCAGCAGGCGGCTGCCGCAGCTTCTCCAGGAGCCCCTCAGATG
CAAGGCAACCCCACTATGGTGCCCCTGCCCCCCGGGGTCCAGCCGCCTCTGCCGCCTGGGGCCCCTCCCCCTCCGCCGCC
TCCACCGCCTGGTTCCGCCGGCATGATGATCCCTCCCCGCGGCGGCGATGGCCCGAGCCATGAGAGTGAGGACTTTCCGC
GCCCATTGGTGACCCTTCCAGGCAGACAGCCTCAGCAACGCCCCTGGTGGACAGGATGGTTCGGCAAAGCAGCCTGA
ATGGCGACCGGAGCGAACGCCACGCCGCTGGACTTCCCAAGTAAGAAGCGGAAGAGGAGCCGCTGGAACCAAGACACAAT
GGAACAAAAGACAGTGATTCCGGGAATGCCTACAGTTATTCCCCCTGGACTTACTCGAGAACAAGAAAGAGCTTACATAG
TGCAACTGCAGATAGAAGACCTGACTCGTAAACTGCGCACAGGAGACCTGGGCATCCCCCCTAACCCTGAGGACAGGTCC
CCTTCCCCTGAGCCCATCTACAATAGTGAGGGGAAGCGGCTTAATACCCGAGAGTTCCGCACCCGCAAAAAGCTGGAAGA
GGAGCGGCACAACCTCATCACTGAGATGGTTGCACTCAACCCGGATTTTAAGCCACCTGCAGATTACAAACCTCCAGCAA
CACGTGTGAGTGATAAAGTCATGATTCCACAAGATGAATACCCAGAAATCAACTTTGTGGGGCTGCTCATTGGGCCCAGA
GGGAACACCCTAAAGAACATAGAGAAGGAGTGCAATGCCAAGATTATGATCCGGGGGAAAGGATCTGTGAAAGAAGGGAA
GGTTGGGCGCAAAGATGGCCAGATGTTGCCAGGAGAAGATGAGCCACTTCATGCCCTGGTCACCGCCAATACAATGGAGA
ACGTCAAAAAGGCAGTGGAACAGATAAGAAACATCTTGAAGCAGGGTATCGAGACCCCAGAAGACCAGAATGATCTACGG
AAGATGCAGCTTCGGGAGTTGGCTCGCTTGAATGGGACCCTTCGGGAAGATGACAACAGGATCTTAAGACCTTGGCAGAG
TTCAGAGACCCGCAGCATTACCAACACCACGGTGTGTACCAAGTGTGGAGGGGCTGGCCACATCGCTTCAGACTGCAAAT
TCCAAAGGCCTGGTGATCCCCAGTCAGCTCAGGATAAAGCACGGATGGATAAAGAATATTTGTCCCTCATGGCTGAACTG
GGTGAAGCGCCCGTCCCAGCATCTGTGGGCTCCACCTCTGGGCCTGCCACCACACCCCTGGCCAGTGCACCTCGTCCTGC
TGCTCCCGCCAACAACCCACCTCCGCCGTCTCTCATGTCCACCACTCAGAGTCGCCCACCCTGGATGAATTCTGGCCCTT
CAGAGAGTCGGCCTTACCATGGCATGCACGGAGGTGGTCCTGGTGGGCCCGGAGGCGGCCCCCACAGCTTCCCACACCCG
TTACCCAGCCTGACAGGTGGGCATGGTGGACATCCCATGCAGCACAACCCCAATGGACCCCCACCCCCTTGGATGCAGCC
ACCACCACCTCCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGGATCAGTACCTGGGAAGTA
CGCCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAGGTATGATGCCGCCACCGCCTATGGGCATGATGCCGCCG
CCGCCTCCGCCTCCCAGTGGGCAGCCCCCGCCCCCTCCCTCTGGTCCTCTTCCCCCATGGCAACAGCAGCAGCAGCAGCC
TCCGCCACCCCCTCCGCCCAGCAGCAGTATGGCTTCCAGTACCCCCTTGCCATGGCAGCAAAATACGACGACTACCACCA
CGAGCGCTGGCACAGGGTCCATCCCGCCATGGCAACAGCAGCAGGCGGCTGCCGCAGCTTCTCCAGGAGCCCCTCAGATG
CAAGGCAACCCCACTATGGTGCCCCTGCCCCCCGGGGTCCAGCCGCCTCTGCCGCCTGGGGCCCCTCCCCCTCCGCCGCC
TCCACCGCCTGGTTCCGCCGGCATGATGATCCCTCCCCGCGGCGGCGATGGCCCGAGCCATGAGAGTGAGGACTTTCCGC
GCCCATTGGTGACCCTTCCAGGCAGACAGCCTCAGCAACGCCCCTGGTGGACAGGATGGTTCGGCAAAGCAGCCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 37 .84 RPM |
| SRP051959_skeletal_muscle | 35 .31 RPM |
| SRP051959_lymph_node | 50 .07 RPM |
| SRP051959_lung | 45 .42 RPM |
| SRP051959_liver | 23 .48 RPM |
| SRP051959_kidney | 32 .52 RPM |
| SRP051959_heart | 36 .94 RPM |
| SRP051959_colon | 24 .43 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000017828 | ortholog_one2many | 1 retrogene | |
| Canis familiaris | ENSCAFG00000014239 | ortholog_one2many | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000006580 | within_species_paralog | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000012368 | within_species_paralog | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000009790 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_1930 | 85.58 | 68.03 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000002780 retrocopies