Parental gene:

RAC2, ENSCJAG00000002144

Aliases:None
Description:ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2) [Source:HGNC Symbol;Acc:9802]
Organism:Marmoset (Callithrix jacchus)
Coordinates:1:199548756..199566650(-)


>ENSCJAG00000002144
ATGCAAGCCATCAAGTGTGTGGTGGTTGGAGATGGGGCCGTGGGCAAGACCTGCCTTCTCATCAGCTACACCACCAACGC
CTTCCCTGGAGAGTACATCCCCACCGTGTTTGACAACTATTCAGCCAATGTGATGGTGGACAGCAAGCCCGTGAACCTGG
GGCTGTGGGACACTGCCGGGCAGGAGGACTACGACCGCCTCCGGCCGCTCTCCTACCCACAGACGGACGTCTTCCTTATC
TGCTTCTCCCTCGTCAGCCCCGCCTCCTATGAGAACGTCCGTGCCAAGTGGTTCCCGGAAGTGCGGCACCACTGCCCCAG
CACACCCATCATCCTGGTGGGCACCAAGCTGGACCTGCGGGATGACAAGGACACCATCGAGAAACTGAAAGAGAAGAAGT
TGGCTCCCATCACCTACCCGCAGGGCCTGGCACTGGCCAAGGAGATTGATTCGGTGAAATACCTGGAGTGCTCAGCCCTC
ACCCAGAGAGGCTTGAAAACAGTGTTCGATGAGGCCATCCGGGCCGTGCTGTGCCCTCAGCCCACGCGGCCGCAGAAGCG
CCCCTGCAGCATCCTCTAG

Library Parental gene expression (RPM)
SRP051959_spleen 8 .19 RPM
SRP051959_skeletal_muscle 0 .15 RPM
SRP051959_lymph_node 26 .57 RPM
SRP051959_lung 10 .10 RPM
SRP051959_liver 2 .01 RPM
SRP051959_kidney 1 .18 RPM
SRP051959_heart 0 .28 RPM
SRP051959_colon 1 .46 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009889 ortholog_one2one 2 retrogenes
retro_amel_1691, retro_amel_647,
Callithrix jacchus ENSCJAG00000000685 other_paralog 1 retrogene
retro_cjac_2403,
Callithrix jacchus ENSCJAG00000005912 other_paralog 6 retrogenes
retro_cjac_1275, retro_cjac_1808, retro_cjac_1826, retro_cjac_2251, retro_cjac_751, retro_cjac_911,
Callithrix jacchus ENSCJAG00000018194 within_species_paralog 1 retrogene
retro_cjac_2687,
Equus caballus ENSECAG00000022570 ortholog_one2one 2 retrogenes
retro_ecab_619, retro_ecab_705,
Erinaceus europaeus ENSEEUG00000009509 ortholog_one2one 1 retrogene
retro_eeur_20,
Felis catus ENSFCAG00000025776 ortholog_one2one 2 retrogenes
retro_fcat_1064, retro_fcat_826,
Gorilla gorilla ENSGGOG00000010612 ortholog_one2one 2 retrogenes
retro_ggor_1403, retro_ggor_188,
Loxodonta africana ENSLAFG00000013012 ortholog_one2one 1 retrogene
retro_lafr_117,
Macropus eugenii ENSMEUG00000012295 ortholog_one2one 2 retrogenes
retro_meug_252, retro_meug_552,
Microcebus murinus ENSMICG00000017775 ortholog_one2one 4 retrogenes
retro_mmur_1104, retro_mmur_1557, retro_mmur_20, retro_mmur_600,
Myotis lucifugus ENSMLUG00000012668 ortholog_one2one 2 retrogenes
retro_mluc_326, retro_mluc_860,
Macaca mulatta ENSMMUG00000018854 ortholog_one2one 2 retrogenes
retro_mmul_1346, retro_mmul_210,
Mustela putorius furo ENSMPUG00000012682 ortholog_one2one 2 retrogenes
retro_mputfur_872, retro_mputfur_911,
Nomascus leucogenys ENSNLEG00000014759 ortholog_one2one 7 retrogenes
retro_nleu_1215, retro_nleu_1330, retro_nleu_2094, retro_nleu_2355, retro_nleu_689, retro_nleu_724, retro_nleu_87,
Oryctolagus cuniculus ENSOCUG00000016115 ortholog_one2one 1 retrogene
retro_ocun_43,
Otolemur garnettii ENSOGAG00000004138 ortholog_one2one 1 retrogene
retro_ogar_2977,
Pongo abelii ENSPPYG00000011791 ortholog_one2one 3 retrogenes
retro_pabe_1591, retro_pabe_21, retro_pabe_3818,
Pteropus vampyrus ENSPVAG00000002281 ortholog_one2one 2 retrogenes
retro_pvam_21, retro_pvam_609,
Sarcophilus harrisii ENSSHAG00000014852 ortholog_one2one 1 retrogene
retro_shar_763,
Sus scrofa ENSSSCG00000021944 ortholog_one2one 4 retrogenes
retro_sscr_40, retro_sscr_565, retro_sscr_582, retro_sscr_882,
Ictidomys tridecemlineatus ENSSTOG00000023766 ortholog_one2one 1 retrogene
retro_itri_510,
Tursiops truncatus ENSTTRG00000001099 ortholog_one2one 8 retrogenes
retro_ttru_1029, retro_ttru_1065, retro_ttru_1188, retro_ttru_1599, retro_ttru_1904, retro_ttru_318, retro_ttru_379, retro_ttru_825,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_847 80.45 68.75
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2. retro_cjac_1158 64.10 79.69
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3. retro_cjac_1954 81.40 67.19
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4. retro_cjac_2917 87.56 100.00
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Download FASTA sequences of all ENSCJAG00000002144 retrocopies