RetrogeneDB ID:

retro_nleu_1330

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397289.1:19312713..19313289(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RAC2
Ensembl ID:ENSNLEG00000014759
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_1330
ATGCAGGCCATCAAGTGTGTGGTGGTGGGAGATGGAGCTGTAGGTAAAATTTGCCTACTGATCAGTTACACAACCAATGC
ATTTCCTGGAGAATATATTCCTACTGTCTTTGACAATTATTCTGCCAATGTTATGGTAGATGGAAAACTGGTGAATCTGG
AATTATGGGATACAGCTGGACAAGATGATGACAGATTACGCCCCCTATCCTATCCGCAAACAGATGTGTTCTTAATTTGC
TTTTCCCTTGTTGAGTCCTGCATCATTTGAAAATGTCCGTGCAAAGTGGTATCCTGAGGTGCGGCACCACTGTCCCAACA
CTCCCATCATCCTAGTGGGAACTAAACTTGATCTTAGGATGATAAAGACACGATTGAGAAACTGAAGAAGCAGCTGACTC
CCATCACCTATCCATGTCAGCAGGGTCTAGCCATGGCTAAGGAGATTGGTGCTGTAAAATACCTGGAGTGCTCGGCGCTC
ACACAGCGAGGCCTCAAGACAGTGTTTGACGAAGTGATCCGAGCAGTCCTCTGCCCACCTCCCGTGAAGAAGAGAAAGAG
AAAATGCCTGCTGTTG

ORF - retro_nleu_1330 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 86.22 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalMQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPL
MQAIKCVVVGDGAVGK.CLLISYTTNAFPGEYIPTVFDNYSANVMVD.K.VNL.LWDTAGQ.D.DRLRPL
RetrocopyMQAIKCVVVGDGAVGKICLLISYTTNAFPGEYIPTVFDNYSANVMVDGKLVNLELWDTAGQDD-DRLRPL
ParentalSYPQTDVFLICFSLV-SPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR-DDKDTIEKLKEKKLAPIT
SYPQTDVFLICFSLV.SPAS.ENVRAKW.PEVRHHCP.TPIILVGTKLDLR.DDKDTIEKLK.K.L.PIT
RetrocopySYPQTDVFLICFSLV>SPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR<DDKDTIEKLK-KQLTPIT
ParentalYP--QGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQPTRQQKRSCSLL
YP..QGLA.AKEI..VKYLECSALTQRGLKTVFDE.IRAVLCP.P....KR.C.LL
RetrocopyYPCQQGLAMAKEIGAVKYLECSALTQRGLKTVFDEVIRAVLCPPPVKKRKRKCLLL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide