Parental gene:

PSMB2, ENSCJAG00000001547

Aliases:None
Description:proteasome (prosome, macropain) subunit, beta type, 2 [Source:HGNC Symbol;Acc:9539]
Organism:Marmoset (Callithrix jacchus)
Coordinates:7:69946175..69982936(-)


>ENSCJAG00000001547
CCAAGCTTCGCTCGGAGGTGCTGTCTCACCGGTGAGACTGGGAAGTCGGCGAGGCTCGCGCTCTGTCGGACCTGGAGCCC
CTGGCCTCCCGCCACCATGGAGTACCTCATCGGTATCCAAGGCCCCGACTATGTTCTTGTCGCCTCCGATCGGGTGGCCG
CCAGCAATATTGTCCAGATGAAGGACGCAGATCATGACAAGATGTTTAAGATGAGTGAAAAAATATTACTCCTGTGTGTT
GGAGAGGCTGGAGACACTGTACAGTTTGCAGAATATATTCAGAAAAACGTGCAACTTTATAAGATGCGAAATGGATATGA
ATTGTCTCCCACCGCAGCAGCTAACTTCACACGCCGAAACCTGGCTGACTGTCTTCGGAGTCGGACTCCATATCATGTCA
ACCTCCTCCTGGCTGGCTATGATGAGCATGAAGGGCCAGCGCTCTACTACATGGACTACCTGGCAGCCTTGGCCAAGGCC
CCTTTTGCAGCCCATGGCTATGGTGCCTTCCTGACTCTCAGTATCCTGGACCGATACTATACACCGACTATCTCACGTGA
GAGGGCAGTAGAGCTTCTTAGGAAATGTCTGGAGGAGCTCCAAAAACGCTTCATCCTGAATCTGCCAACCTTCAGTGTTC
GAATCATTGACAAAAATGGCATCCATGACCTGGACAACATTTCCTTCCCTAAACAGGGCTCCTAA

Library Parental gene expression (RPM)
SRP051959_spleen 17 .06 RPM
SRP051959_skeletal_muscle 18 .80 RPM
SRP051959_lymph_node 12 .47 RPM
SRP051959_lung 10 .74 RPM
SRP051959_liver 18 .48 RPM
SRP051959_kidney 13 .02 RPM
SRP051959_heart 10 .26 RPM
SRP051959_colon 14 .20 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000715 ortholog_one2one 1 retrogene
retro_amel_743,
Canis familiaris ENSCAFG00000003543 ortholog_one2one 1 retrogene
retro_cfam_1291,
Dasypus novemcinctus ENSDNOG00000017663 ortholog_one2one 1 retrogene
retro_dnov_159,
Equus caballus ENSECAG00000021615 ortholog_one2one 1 retrogene
retro_ecab_769,
Echinops telfairi ENSETEG00000019511 ortholog_one2one 1 retrogene
retro_etel_1529,
Felis catus ENSFCAG00000030845 ortholog_one2one 1 retrogene
retro_fcat_1803,
Macropus eugenii ENSMEUG00000000421 ortholog_one2one 1 retrogene
retro_meug_1235,
Monodelphis domestica ENSMODG00000017902 ortholog_one2many 1 retrogene
retro_mdom_79,
Mustela putorius furo ENSMPUG00000014891 ortholog_one2one 1 retrogene
retro_mputfur_1550,
Ochotona princeps ENSOPRG00000012259 ortholog_one2one 2 retrogenes
retro_opri_76, retro_opri_762,
Pteropus vampyrus ENSPVAG00000001871 ortholog_one2one 1 retrogene
retro_pvam_909,
Sorex araneus ENSSARG00000000409 ortholog_one2one 2 retrogenes
retro_sara_557, retro_sara_660,
Sarcophilus harrisii ENSSHAG00000016996 ortholog_one2one 1 retrogene
retro_shar_794,
Tupaia belangeri ENSTBEG00000005230 ortholog_one2one 1 retrogene
retro_tbel_4039,
Tarsius syrichta ENSTSYG00000005648 ortholog_one2one 2 retrogenes
retro_tsyr_403, retro_tsyr_912,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2110 78.86 52.14
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Download FASTA sequences of all ENSCJAG00000001547 retrocopies