Parental gene: | TPM1, ENSCHOG00000012788 |
| Aliases: | None |
| Description: | tropomyosin 1 (alpha) [Source:HGNC Symbol;Acc:12010] |
| Organism: | Sloth (Choloepus hoffmanni) |
| Coordinates: | GeneScaffold_4024:10386..24179(+) |
>ENSCHOG00000012788
GCTGAAGCCGATGTAGCTTCTCTGAACAGACGTATCCAGCTGGTTGAGGAAGAGTTGGATCGTGCCCAGGAGCGGCTGGC
AACAGCTCTGCAGAAGCTGGAAGAGGCTGAGAAGGCAGCAGATGAGAGCGAGAGAGGCATGAAAGTCATTGAAAGTCGAG
CCCAAAAGGATGAGGAAAAAATGGAAATTCAGGAGATCCAACTGAAAGAGGCCAAGCACATCGCTGAAGATGCTGACCGC
AAGTATGAAGAGGTGGCCCGTAAGCTGATCATTGAGAGTGACCTGGAACGTGCAGAGGAGCGGGCCGAGCTCTCAGAAGG
CAAATGTGCCGAACTTGAAGAAGAATTGAAAACTGTGACGAACAACTTGAAGTCACTGGAGGCTCAGGCTGAGAAGTACT
CGCAGAAGGAAGACAAGTATGAGGAAGAGATCAAGGTCCTTTCTGACAAGCTGAAGGAGGCTGAGACTCGGGCTGAGTTT
GCAGAGAGGTCAGTAACTAAATTGGAGAAAAGCATTGATGACTTAGAAGAGAAAGTGGCTCATGCCAAAGAAGAAAACCT
TAGTATGCATCAGATGCTGGATCAGACTTTACTGGAGTTAAACAACATGTGA
GCTGAAGCCGATGTAGCTTCTCTGAACAGACGTATCCAGCTGGTTGAGGAAGAGTTGGATCGTGCCCAGGAGCGGCTGGC
AACAGCTCTGCAGAAGCTGGAAGAGGCTGAGAAGGCAGCAGATGAGAGCGAGAGAGGCATGAAAGTCATTGAAAGTCGAG
CCCAAAAGGATGAGGAAAAAATGGAAATTCAGGAGATCCAACTGAAAGAGGCCAAGCACATCGCTGAAGATGCTGACCGC
AAGTATGAAGAGGTGGCCCGTAAGCTGATCATTGAGAGTGACCTGGAACGTGCAGAGGAGCGGGCCGAGCTCTCAGAAGG
CAAATGTGCCGAACTTGAAGAAGAATTGAAAACTGTGACGAACAACTTGAAGTCACTGGAGGCTCAGGCTGAGAAGTACT
CGCAGAAGGAAGACAAGTATGAGGAAGAGATCAAGGTCCTTTCTGACAAGCTGAAGGAGGCTGAGACTCGGGCTGAGTTT
GCAGAGAGGTCAGTAACTAAATTGGAGAAAAGCATTGATGACTTAGAAGAGAAAGTGGCTCATGCCAAAGAAGAAAACCT
TAGTATGCATCAGATGCTGGATCAGACTTTACTGGAGTTAAACAACATGTGA
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000016966 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000004355 | ortholog_one2one | 2 retrogenes | |
| Macropus eugenii | ENSMEUG00000014581 | ortholog_one2one | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000006534 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000018184 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000009955 | ortholog_one2many | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000003762 | ortholog_one2one | 1 retrogene | |
| Vicugna pacos | ENSVPAG00000003277 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_chof_346 | 81.37 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_chof_399 | 82.24 | 52.71 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_chof_412 | 68.72 | 87.19 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_chof_770 | 76.17 | 94.58 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_chof_967 | 75.61 | 60.10 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_chof_1194 | 76.67 | 58.13 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_chof_1272 | 59.72 | 69.95 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_chof_1360 | 67.02 | 91.63 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_chof_1789 | 78.29 | 74.38 | Please wait, loading | Please wait, loading | Please wait, loading |
| 10. | retro_chof_1829 | 81.68 | 99.01 | Please wait, loading | Please wait, loading | Please wait, loading |
| 11. | retro_chof_2309 | 67.80 | 99.51 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCHOG00000012788 retrocopies