Parental gene:

PSMB3, ENSCAFG00000016587

Aliases:None
Description:Canis lupus familiaris proteasome (prosome, macropain) subunit, beta type, 3 (PSMB3), mRNA. [Source:RefSeq mRNA;Acc:NM_001252157]
Organism:Dog (Canis familiaris)
Coordinates:9:23474475..23484408(-)


>ENSCAFG00000016587
ATGTCTATTATGTCCTATAATGGAGGGGCCGTCATGGCCATGAAGGGGAAGAACTGCGTGGCCATCGCTGCCGACAGGCG
CTTCGGGATCCAGGCCCAGATGGTGACCACGGACTTCCAGAAGATCTTTCCCATGGGTGATCGGCTGTACATAGGCCTGG
CCGGGCTCGCCACGGATGTCCAGACTGTTGCCCAGCGTCTCAAGTTCCGGCTAAACCTGTATGAGCTGAAGGAAGGCCGG
CAGATCAAGCCCTACACACTCATGAGCATGGTGGCCAACCTCTTGTATGAGAAACGGTTTGGCCCCTACTACACAGAGCC
AGTCATCGCTGGGTTGGACCCAAAGACCTTTAAGCCCTTCATCTGCTCTCTAGACCTCATCGGCTGCCCCATGGTGACTG
ATGACTTTGTGGTCAGTGGCACCTGCTCCGAACAAATGTATGGGATGTGCGAGTCCCTCTGGGAGCCCAACATGGACCCA
GAACACCTGTTTGAAACCATCTCACAAGCCATGCTGAATGCTGTGGATCGGGATGCGGTGTCAGGCATGGGAGTCATTGT
CCACATCATTGAGAAGGACAAAATCACCACCAGGACACTGAAGGCCCGCATGGACTAA

Library Parental gene expression (RPM)
SRP017611_brain 19 .29 RPM
SRP017611_kidney 64 .72 RPM
SRP017611_liver 18 .56 RPM
SRP012049_cerebellum 38 .85 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000004363 ortholog_one2one 1 retrogene
retro_amel_619,
Callithrix jacchus ENSCJAG00000008246 possible_ortholog 1 retrogene
retro_cjac_2852,
Equus caballus ENSECAG00000000987 possible_ortholog 1 retrogene
retro_ecab_476,
Erinaceus europaeus ENSEEUG00000015275 possible_ortholog 1 retrogene
retro_eeur_10,
Felis catus ENSFCAG00000014497 ortholog_one2one 3 retrogenes
retro_fcat_1270, retro_fcat_1442, retro_fcat_784,
Homo sapiens ENSG00000108294 possible_ortholog 2 retrogenes
retro_hsap_1121, retro_hsap_2387,
Gorilla gorilla ENSGGOG00000007067 possible_ortholog 2 retrogenes
retro_ggor_103, retro_ggor_876,
Loxodonta africana ENSLAFG00000002233 possible_ortholog 1 retrogene
retro_lafr_70,
Macropus eugenii ENSMEUG00000004131 ortholog_one2many 2 retrogenes
retro_meug_1804, retro_meug_551,
Microcebus murinus ENSMICG00000002997 possible_ortholog 1 retrogene
retro_mmur_397,
Macaca mulatta ENSMMUG00000012363 possible_ortholog 1 retrogene
retro_mmul_868,
Monodelphis domestica ENSMODG00000012614 ortholog_one2many 2 retrogenes
retro_mdom_1722, retro_mdom_1812,
Mus musculus ENSMUSG00000069744 ortholog_one2many 8 retrogenes
retro_mmus_1449, retro_mmus_1551, retro_mmus_1790, retro_mmus_1938, retro_mmus_2110, retro_mmus_41, retro_mmus_46, retro_mmus_536,
Nomascus leucogenys ENSNLEG00000000594 possible_ortholog 3 retrogenes
retro_nleu_1511, retro_nleu_188, retro_nleu_371,
Oryctolagus cuniculus ENSOCUG00000002598 possible_ortholog 1 retrogene
retro_ocun_561,
Pongo abelii ENSPPYG00000008505 possible_ortholog 2 retrogenes
retro_pabe_2153, retro_pabe_927,
Pteropus vampyrus ENSPVAG00000002270 possible_ortholog 1 retrogene
retro_pvam_822,
Rattus norvegicus ENSRNOG00000012938 possible_ortholog 7 retrogenes
retro_rnor_1016, retro_rnor_2094, retro_rnor_2448, retro_rnor_2537, retro_rnor_2804, retro_rnor_743, retro_rnor_8,
Ictidomys tridecemlineatus ENSSTOG00000014258 possible_ortholog 3 retrogenes
retro_itri_527, retro_itri_935, retro_itri_936,
Tupaia belangeri ENSTBEG00000013010 ortholog_one2one 2 retrogenes
retro_tbel_1387, retro_tbel_2693,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_135 96.10 100.00
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2. retro_cfam_532 74.52 100.00
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Download FASTA sequences of all ENSCAFG00000016587 retrocopies