Parental gene: | ENSCAFG00000010335 |
| Aliases: | None |
| Description: | None |
| Organism: | Dog (Canis familiaris) |
| Coordinates: | 33:14485604..14493209(-) |
>ENSCAFG00000010335
CTCTGTCGCCGGCAGGGCTCCACGAAGTCGGGGGAAGACTACCTGGCTGGCCAATCCCAACCTGTGTCGGAAGAAGCCAA
AGAGAAACAGCAGGCGTACGGTGAACCAAAGTTACCAGGAACCTCAGCAAGTGGGACCAAACGGAAGAGATCTATGAAAG
AAGGCAAAGCTTCCTGTTCAGAAAAGACGGCACAAGAGAGTACAAGAGTAAGAATTCGGAAGAAAATCCCAGTTCCTCCA
TTACCTTCGAAACTGCCACCAGCCAACTTGCTTCACCGAGACATCCTGCGGGCCTGGTGCCAAGAACTCAAGCTGAGCAC
CAAAGGCCAGAAATTAGATGTATATAAGCGAATCTGCGAATATGCTTACCCAGATCAAAAGACAAACATTCCTGTCACCG
CAGAGGAGGCCAAGATTCTCACCCAGACACAAAGAAGGTTGATGATGGACAAGGGGGAAATGTCTCTGGAAAGTCCTGGA
ACAAAGATACCTTCTGATGGAACCTACCCTCCTGAAGTGGCTGCCCCCGCTGAGGGGTCTGATGCTCTCCTGGAGGGGGT
CAATACTGTTGTTGTGACCACTTCGGCCCCAGATTCCGTGTTTGCCTCCTGGTCCAGAATTGCAGCCAGGGCTGGGAAGA
TGGAGACAGTGGCATCGCCACAGGAGGCCCACGGTGCCAAGTGGTGTGTGGTCCATGGGAGAAGTATGCCTGCAGACACA
GAAGGTTGGGTTCACCTGCAATTTCATGCAGGACAAGCCTGGGTGCCTGAAAAGCGGGGGAGAGTATGCGCCCTCTTCTT
GCTCCCCGCTTGTAACTTCCCACCCCCACAGCTGGAGGACAACATGCTGTGCCCCAAATGTGTTCGCAGGAATAAGGTGT
TAATGAAAAGCCTCCAATGA
CTCTGTCGCCGGCAGGGCTCCACGAAGTCGGGGGAAGACTACCTGGCTGGCCAATCCCAACCTGTGTCGGAAGAAGCCAA
AGAGAAACAGCAGGCGTACGGTGAACCAAAGTTACCAGGAACCTCAGCAAGTGGGACCAAACGGAAGAGATCTATGAAAG
AAGGCAAAGCTTCCTGTTCAGAAAAGACGGCACAAGAGAGTACAAGAGTAAGAATTCGGAAGAAAATCCCAGTTCCTCCA
TTACCTTCGAAACTGCCACCAGCCAACTTGCTTCACCGAGACATCCTGCGGGCCTGGTGCCAAGAACTCAAGCTGAGCAC
CAAAGGCCAGAAATTAGATGTATATAAGCGAATCTGCGAATATGCTTACCCAGATCAAAAGACAAACATTCCTGTCACCG
CAGAGGAGGCCAAGATTCTCACCCAGACACAAAGAAGGTTGATGATGGACAAGGGGGAAATGTCTCTGGAAAGTCCTGGA
ACAAAGATACCTTCTGATGGAACCTACCCTCCTGAAGTGGCTGCCCCCGCTGAGGGGTCTGATGCTCTCCTGGAGGGGGT
CAATACTGTTGTTGTGACCACTTCGGCCCCAGATTCCGTGTTTGCCTCCTGGTCCAGAATTGCAGCCAGGGCTGGGAAGA
TGGAGACAGTGGCATCGCCACAGGAGGCCCACGGTGCCAAGTGGTGTGTGGTCCATGGGAGAAGTATGCCTGCAGACACA
GAAGGTTGGGTTCACCTGCAATTTCATGCAGGACAAGCCTGGGTGCCTGAAAAGCGGGGGAGAGTATGCGCCCTCTTCTT
GCTCCCCGCTTGTAACTTCCCACCCCCACAGCTGGAGGACAACATGCTGTGCCCCAAATGTGTTCGCAGGAATAAGGTGT
TAATGAAAAGCCTCCAATGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 0 .00 RPM |
| SRP017611_kidney | 0 .00 RPM |
| SRP017611_liver | 0 .00 RPM |
| SRP012049_cerebellum | 0 .00 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000020171 | ortholog_many2many | 2 retrogenes | |
| Echinops telfairi | ENSETEG00000002722 | ortholog_one2many | 1 retrogene | |
| Homo sapiens | ENSG00000121570 | ortholog_one2many | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000015121 | ortholog_one2many | 2 retrogenes | |
| Loxodonta africana | ENSLAFG00000016804 | ortholog_one2many | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000016423 | ortholog_one2many | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000016901 | ortholog_many2many | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000018083 | ortholog_one2many | 3 retrogenes | |
| Mustela putorius furo | ENSMPUG00000010206 | ortholog_one2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000058550 | ortholog_many2many | 3 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000004030 | ortholog_one2many | 3 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000016435 | ortholog_many2many | 1 retrogene | |
| Pongo abelii | ENSPPYG00000013565 | ortholog_one2many | 3 retrogenes | |
| Pan troglodytes | ENSPTRG00000015200 | ortholog_one2many | 2 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000010677 | ortholog_one2many | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000025404 | ortholog_many2many | 4 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000017398 | ortholog_one2many | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000009508 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cfam_996 | 81.85 | 99.33 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cfam_1332 | 85.95 | 99.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cfam_1540 | 92.62 | 89.97 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cfam_1905 | 86.62 | 99.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cfam_1934 | 92.73 | 55.18 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCAFG00000010335 retrocopies