Parental gene:

CHMP4B, ENSCAFG00000007478

Aliases:None
Description:charged multivesicular body protein 4B [Source:HGNC Symbol;Acc:16171]
Organism:Dog (Canis familiaris)
Coordinates:24:22995797..23051149(+)


>ENSCAFG00000007478
ATGTCGGTGTTCGGGAAACTGTTCGGGGCAGGAGGGGGTAAGGCCGGCAAGGGCGGTCCGACCCCTCAAGATGCCATCCA
GCGGCTGCGGGACACGGAGGAGATGCTAAGTAAAAAACAGGAATTCCTGGAGACCAAGATCGAGCAGGAGCTGACCGCTG
CCAAGAAGCACGGCACCAAAAACAAGCGCGCGGCCCTCCAGGCACTGAAGCGCAAGAAGAGGTATGAAAAGCAGCTGGCG
CAGATCGACGGCACACTATCAACCATCGAGTTTCAGCGGGAAGCCCTGGAGAATGCCAATACCAACACCGAGGTGCTCAA
GAACATGGGCTATGCTGCTAAGGCGATGAAGGCTGCCCATGACAACATGGACATCGATAAAGTTGATGAATTAATGCAGG
ACATTGCTGACCAGCAAGAACTTGCAGAGGAGATTTCAACAGCTATTTCAAAACCTGTAGGATTTGGAGAAGAGTTTGAT
GAGGATGAACTCATGGCAGAATTAGAAGAACTAGAACAGGAAGAACTAGACAAGAATTTGCTGGAAATCAGTGGACCCGA
AACAGTCCCTCTACCAAATGTTCCCTCTATAACCTTACCATCAAAACCCACCAAGAAGAAGGAAGAGGAAGAGGATGACA
TGAAGGAATTGGAGAACTGGGCTGGATCCATGTAA

Library Parental gene expression (RPM)
SRP017611_brain 122 .58 RPM
SRP017611_kidney 80 .17 RPM
SRP017611_liver 20 .59 RPM
SRP012049_cerebellum 121 .17 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009038 ortholog_one2one 1 retrogene
retro_amel_1612,
Choloepus hoffmanni ENSCHOG00000007288 ortholog_one2one 1 retrogene
retro_chof_2518,
Equus caballus ENSECAG00000008311 ortholog_one2one 1 retrogene
retro_ecab_496,
Felis catus ENSFCAG00000025893 ortholog_one2one 1 retrogene
retro_fcat_1835,
Homo sapiens ENSG00000101421 ortholog_one2one 1 retrogene
retro_hsap_1339,
Gorilla gorilla ENSGGOG00000007775 ortholog_one2one 1 retrogene
retro_ggor_29,
Macaca mulatta ENSMMUG00000008084 ortholog_one2one 1 retrogene
retro_mmul_2178,
Mustela putorius furo ENSMPUG00000017821 ortholog_one2one 2 retrogenes
retro_mputfur_1302, retro_mputfur_697,
Nomascus leucogenys ENSNLEG00000010020 ortholog_one2one 1 retrogene
retro_nleu_1822,
Pongo abelii ENSPPYG00000010931 ortholog_one2one 1 retrogene
retro_pabe_1111,
Pan troglodytes ENSPTRG00000013408 ortholog_one2one 1 retrogene
retro_ptro_915,
Pteropus vampyrus ENSPVAG00000010293 ortholog_one2one 1 retrogene
retro_pvam_973,
Rattus norvegicus ENSRNOG00000046585 possible_ortholog 1 retrogene
retro_rnor_61,
Tarsius syrichta ENSTSYG00000013212 ortholog_one2one 1 retrogene
retro_tsyr_1453,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_1304 72.88 52.23
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Download FASTA sequences of all ENSCAFG00000007478 retrocopies