Parental gene:

SNRPB2, ENSCAFG00000005520

Aliases:None
Description:Canis lupus familiaris small nuclear ribonucleoprotein polypeptide B (SNRPB2), mRNA. [Source:RefSeq mRNA;Acc:NM_001251968]
Organism:Dog (Canis familiaris)
Coordinates:24:6106216..6117369(-)


>ENSCAFG00000005520
ATGGATATCAGACCAAATCATACAATTTACATTAACAATATGAATGACAAAATTAAAAAAGAAGAATTGAAGAGATCCCT
ATACGCCCTGTTTTCTCAGTTTGGCCATGTGGTAGATATTGTAGCTTTAAAGACCATGAAGATGAGGGGGCAAGCCTTTG
TTATTTTTAAGGAACTGGGCTCATCCACAAATGCCTTGAGACAGTTACAAGGATTTCCATTTTATGGCAAACCAATGCGA
ATCCAGTATGCAAAAACAGATTCGGATATAATATCTAAAATGCGTGGCACTTTTGCTGACAAAGAAAAGAAGAAGGAAAA
GAAAAAAGCAAAAACTGTGGAACAGACTGCAACCACTGCAAGCAAAAAGCCTGGTCAGGGAACACCAAATGCAGCAAATA
CCCAAGGAAATTCAACACCAAATCCTCAGGTCCCTGATTACCCTCCAAACTATATTTTATTCCTCAACAATTTACCAGAA
GAGACTAATGAGATGATGTTGTCTATGCTGTTTAATCAGTTTCCGGGCTTCAAAGAAGTACGTTTGGTACCCGGAAGGCA
TGACATTGCTTTTGTTGAATTTGAAAATGATGGACAGGCTGGAGCTGCCAGGGATGCTTTACAGGGATTTAAAATCACAC
CGTCCCATGCCATGAAGATCACATATGCCAAAAAATAA

Library Parental gene expression (RPM)
SRP017611_brain 11 .11 RPM
SRP017611_kidney 28 .53 RPM
SRP017611_liver 6 .67 RPM
SRP012049_cerebellum 22 .72 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016500 ortholog_one2one 2 retrogenes
retro_amel_235, retro_amel_490,
Bos taurus ENSBTAG00000027506 ortholog_one2one 1 retrogene
retro_btau_1172,
Canis familiaris ENSCAFG00000005091 within_species_paralog 1 retrogene
retro_cfam_1114,
Callithrix jacchus ENSCJAG00000004811 ortholog_one2many 1 retrogene
retro_cjac_269,
Equus caballus ENSECAG00000018407 ortholog_one2one 2 retrogenes
retro_ecab_118, retro_ecab_372,
Echinops telfairi ENSETEG00000001085 ortholog_one2many 3 retrogenes
retro_etel_1283, retro_etel_1723, retro_etel_2031,
Felis catus ENSFCAG00000026115 ortholog_one2one 1 retrogene
retro_fcat_1513,
Homo sapiens ENSG00000125870 ortholog_one2one 2 retrogenes
retro_hsap_3678, retro_hsap_732,
Gorilla gorilla ENSGGOG00000003937 ortholog_one2one 2 retrogenes
retro_ggor_2487, retro_ggor_617,
Macropus eugenii ENSMEUG00000016552 ortholog_one2many 2 retrogenes
retro_meug_465, retro_meug_482,
Microcebus murinus ENSMICG00000015404 ortholog_one2one 1 retrogene
retro_mmur_762,
Myotis lucifugus ENSMLUG00000008163 ortholog_one2one 5 retrogenes
retro_mluc_1450, retro_mluc_1451, retro_mluc_1452, retro_mluc_2268, retro_mluc_586,
Macaca mulatta ENSMMUG00000014493 ortholog_one2one 1 retrogene
retro_mmul_1788,
Mus musculus ENSMUSG00000008333 ortholog_one2one 4 retrogenes
retro_mmus_1496, retro_mmus_1497, retro_mmus_2378, retro_mmus_3325,
Nomascus leucogenys ENSNLEG00000009623 ortholog_one2one 2 retrogenes
retro_nleu_477, retro_nleu_527,
Oryctolagus cuniculus ENSOCUG00000001427 ortholog_one2one 3 retrogenes
retro_ocun_1069, retro_ocun_380, retro_ocun_485,
Otolemur garnettii ENSOGAG00000015146 ortholog_one2one 1 retrogene
retro_ogar_2042,
Ochotona princeps ENSOPRG00000011587 ortholog_one2one 2 retrogenes
retro_opri_59, retro_opri_776,
Pongo abelii ENSPPYG00000010723 ortholog_one2one 1 retrogene
retro_pabe_630,
Pan troglodytes ENSPTRG00000013271 ortholog_one2one 2 retrogenes
retro_ptro_2492, retro_ptro_520,
Rattus norvegicus ENSRNOG00000004967 ortholog_one2one 1 retrogene
retro_rnor_962,
Sorex araneus ENSSARG00000002681 ortholog_one2one 14 retrogenes
retro_sara_197, retro_sara_209, retro_sara_289, retro_sara_290, retro_sara_328, retro_sara_374, retro_sara_514, retro_sara_546, retro_sara_548, retro_sara_604, retro_sara_670, retro_sara_724, retro_sara_733, retro_sara_770,
Ictidomys tridecemlineatus ENSSTOG00000009198 ortholog_one2one 1 retrogene
retro_itri_1895,
Tupaia belangeri ENSTBEG00000012892 ortholog_one2one 6 retrogenes
retro_tbel_1123, retro_tbel_2350, retro_tbel_3126, retro_tbel_3534, retro_tbel_3754, retro_tbel_530,
Tarsius syrichta ENSTSYG00000008857 ortholog_one2one 52 retrogenes
retro_tsyr_1067, retro_tsyr_1072, retro_tsyr_1083, retro_tsyr_1124, retro_tsyr_1158, retro_tsyr_1175, retro_tsyr_1216, retro_tsyr_1223, retro_tsyr_1242, retro_tsyr_1244, retro_tsyr_1245, retro_tsyr_1247, retro_tsyr_1261, retro_tsyr_1279, retro_tsyr_1323, retro_tsyr_1339, retro_tsyr_1361, retro_tsyr_1386, retro_tsyr_1434, retro_tsyr_1438, retro_tsyr_1461, retro_tsyr_1468, retro_tsyr_1469, retro_tsyr_1470, retro_tsyr_1501, retro_tsyr_1503, retro_tsyr_1513, retro_tsyr_1533, retro_tsyr_1586, retro_tsyr_1599, retro_tsyr_1616, retro_tsyr_1619, retro_tsyr_1629, retro_tsyr_1699, retro_tsyr_1720, retro_tsyr_1724, retro_tsyr_1776, retro_tsyr_1872, retro_tsyr_1930, retro_tsyr_1962, retro_tsyr_286, retro_tsyr_384, retro_tsyr_397, retro_tsyr_500, retro_tsyr_584, retro_tsyr_629, retro_tsyr_695, retro_tsyr_805, retro_tsyr_835, retro_tsyr_899, retro_tsyr_977, retro_tsyr_979,
Tursiops truncatus ENSTTRG00000006395 ortholog_one2one 1 retrogene
retro_ttru_1545,
Vicugna pacos ENSVPAG00000004557 ortholog_one2one 1 retrogene
retro_vpac_67,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_264 92.06 95.11
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2. retro_cfam_1097 87.22 100.00
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3. retro_cfam_1661 83.67 64.89
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4. retro_cfam_1689 91.56 100.00
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Download FASTA sequences of all ENSCAFG00000005520 retrocopies