Parental gene:

CNBP, ENSCAFG00000004320

Aliases:None
Description:Canis lupus familiaris CCHC-type zinc finger, nucleic acid binding protein (CNBP), transcript variant 1, mRNA. [Source:RefSeq mRNA;Acc:NM_001252264]
Organism:Dog (Canis familiaris)
Coordinates:20:2916623..2929307(+)


>ENSCAFG00000004320
ATGAGCAGCAATGAGTGTTTCAAGTGTGGACGATCTGGCCATTGGGCCCGGGAATGCCCTACTGGTGGAGGCCGTGGTCG
TGGAATGAGAAGCCGTGGCAGAGGTGGTTTTACCTCGGATAGAGGTTTCCAGTTTGTTTCCTCATCTCTTCCAGACATCT
GTTATCGCTGTGGTGAGTCTGGTCATCTTGCCAAGGATTGTGATCTTCAAGAGGATGTTGAAGCCTGCTATAACTGCGGT
AGAGGTGGCCACATCGCCAAGGACTGCAAGGAGCCCAAGAGAGAGCGGGAGCAATGCTGCTACAACTGTGGCAAACCAGG
CCATCTGGCTCGTGACTGTGACCATGCTGATGAGCAGAAGTGCTATTCTTGTGGAGAATTTGGACACATTCAAAAAGACT
GCACCAAAGTGAAGTGCTATAGGTGTGGTGAAACTGGTCACGTAGCCATCAATTGCAGCAAGACAAGTGAAGTCAACTGT
TACCGCTGTGGCGAGTCAGGGCACCTTGCACGGGAATGCACGATTGAAGCCACAGCTTAA

Library Parental gene expression (RPM)
SRP017611_brain 156 .16 RPM
SRP017611_kidney 330 .52 RPM
SRP017611_liver 100 .29 RPM
SRP012049_cerebellum 281 .52 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000015334 ortholog_one2one 2 retrogenes
retro_amel_1285, retro_amel_1773,
Cavia porcellus ENSCPOG00000012816 ortholog_one2one 2 retrogenes
retro_cpor_424, retro_cpor_94,
Dipodomys ordii ENSDORG00000002919 ortholog_one2one 1 retrogene
retro_dord_569,
Echinops telfairi ENSETEG00000008408 possible_ortholog 5 retrogenes
retro_etel_12, retro_etel_1791, retro_etel_2192, retro_etel_237, retro_etel_583,
Felis catus ENSFCAG00000028042 ortholog_one2one 2 retrogenes
retro_fcat_1922, retro_fcat_2001,
Homo sapiens ENSG00000169714 ortholog_one2one 1 retrogene
retro_hsap_50,
Gorilla gorilla ENSGGOG00000010085 ortholog_one2one 1 retrogene
retro_ggor_2926,
Macropus eugenii ENSMEUG00000011699 ortholog_one2one 1 retrogene
retro_meug_55,
Myotis lucifugus ENSMLUG00000012554 ortholog_one2one 1 retrogene
retro_mluc_141,
Macaca mulatta ENSMMUG00000011585 ortholog_one2one 1 retrogene
retro_mmul_2505,
Mustela putorius furo ENSMPUG00000017315 ortholog_one2one 3 retrogenes
retro_mputfur_1465, retro_mputfur_1555, retro_mputfur_583,
Mus musculus ENSMUSG00000030057 ortholog_one2one 1 retrogene
retro_mmus_230,
Nomascus leucogenys ENSNLEG00000014482 ortholog_one2one 1 retrogene
retro_nleu_1986,
Otolemur garnettii ENSOGAG00000013898 possible_ortholog 1 retrogene
retro_ogar_144,
Ochotona princeps ENSOPRG00000005487 ortholog_one2one 5 retrogenes
retro_opri_139, retro_opri_49, retro_opri_496, retro_opri_566, retro_opri_965,
Pongo abelii ENSPPYG00000013423 ortholog_one2one 1 retrogene
retro_pabe_3658,
Pan troglodytes ENSPTRG00000015369 ortholog_one2one 1 retrogene
retro_ptro_3131,
Rattus norvegicus ENSRNOG00000010239 ortholog_one2one 2 retrogenes
retro_rnor_207, retro_rnor_727,
Ictidomys tridecemlineatus ENSSTOG00000000173 ortholog_one2one 1 retrogene
retro_itri_113,
Tarsius syrichta ENSTSYG00000004344 ortholog_one2one 1 retrogene
retro_tsyr_1889,
Vicugna pacos ENSVPAG00000007138 ortholog_one2one 1 retrogene
retro_vpac_548,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_23 78.23 69.27
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2. retro_cfam_1272 67.48 67.60
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Download FASTA sequences of all ENSCAFG00000004320 retrocopies