Parental gene: | SSR1, ENSBTAG00000022731 |
| Aliases: | None |
| Description: | Translocon-associated protein subunit alpha [Source:UniProtKB/Swiss-Prot;Acc:A6QLP7] |
| Organism: | Cow (Bos taurus) |
| Coordinates: | 23:47853792..47871932(+) |
>ENSBTAG00000022731
ATGAGTTCCCTTCGCCGCCTGCTGTTGCTTCTCCTGCTGGTGTTCCCCGCCACCCTCCTGCTCCGAGTCGGCCCAGGAGG
CTCATTGGCAGTGGCGCAGGATCTTACAGAAGATGAAGAAACCGTGGAAGATTCTATAATTGAAGATGAAGATGATGAAG
CAGAGGTGGAAGAAGATGAACCGACAGATTTGGCTGAAGATAAAGAGGAAGATGATGTATCGGGTGAACCTGAAGCTTCG
CCAAGTGCAGATACAACCATCCTGTTTGTGAAAGGAGAAGATTTTCCAGCAAATAACATTGTGAAGTTCCTGGTAGGCTT
TACAAACAAGGGTACAGAAGATTTTATCGTCGAGTCTCTGGACGCCTCATTCCGTTACCCTCAGGACTACCAGTTTTATA
TCCAGAATTTCACCGCTCTTCCTCTGAACACGGTCGTGCCGCCCCAGAGACAGGCAACCTTTGAGTACTCCTTCATCCCC
GCAGAGCCCATGGGGGGCCGGCCCTTCGGTCTGGTCATCAACCTGAACTACAAGGATCTGAATGGTAATGTTTTCCAAGA
TGCTGTCTTCAATCAAACGGTTACAATTATCGAGAGAGAAGATGGGTTAGATGGAGAAACCATATTTATGTACATGTTCC
TGGCTGGTCTCGGGCTGCTGGTTGTCGTTGGCCTTCATCAGCTCCTGGAATCTAGAAAGCGCAAGAGGCCCATTCAGAAG
GTAGAGATGGGAACCTCGAGTCAAAACGACGTCGACATGAGCTGGATTCCTCAGGAAACTCTGAACCAGATCAATAAAGC
TTCACCAAGAAGGTTGCCCAGGAAACGGGCACAGAAGAGATCAGTGGGATCTGATGAGTAA
ATGAGTTCCCTTCGCCGCCTGCTGTTGCTTCTCCTGCTGGTGTTCCCCGCCACCCTCCTGCTCCGAGTCGGCCCAGGAGG
CTCATTGGCAGTGGCGCAGGATCTTACAGAAGATGAAGAAACCGTGGAAGATTCTATAATTGAAGATGAAGATGATGAAG
CAGAGGTGGAAGAAGATGAACCGACAGATTTGGCTGAAGATAAAGAGGAAGATGATGTATCGGGTGAACCTGAAGCTTCG
CCAAGTGCAGATACAACCATCCTGTTTGTGAAAGGAGAAGATTTTCCAGCAAATAACATTGTGAAGTTCCTGGTAGGCTT
TACAAACAAGGGTACAGAAGATTTTATCGTCGAGTCTCTGGACGCCTCATTCCGTTACCCTCAGGACTACCAGTTTTATA
TCCAGAATTTCACCGCTCTTCCTCTGAACACGGTCGTGCCGCCCCAGAGACAGGCAACCTTTGAGTACTCCTTCATCCCC
GCAGAGCCCATGGGGGGCCGGCCCTTCGGTCTGGTCATCAACCTGAACTACAAGGATCTGAATGGTAATGTTTTCCAAGA
TGCTGTCTTCAATCAAACGGTTACAATTATCGAGAGAGAAGATGGGTTAGATGGAGAAACCATATTTATGTACATGTTCC
TGGCTGGTCTCGGGCTGCTGGTTGTCGTTGGCCTTCATCAGCTCCTGGAATCTAGAAAGCGCAAGAGGCCCATTCAGAAG
GTAGAGATGGGAACCTCGAGTCAAAACGACGTCGACATGAGCTGGATTCCTCAGGAAACTCTGAACCAGATCAATAAAGC
TTCACCAAGAAGGTTGCCCAGGAAACGGGCACAGAAGAGATCAGTGGGATCTGATGAGTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 164 .40 RPM |
| SRP017611_kidney | 270 .81 RPM |
| SRP017611_liver | 292 .14 RPM |
| ERP005899_muscle | 230 .95 RPM |
| ERP005899_liver | 155 .15 RPM |
| SRP030211_testis | 206 .71 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Dasypus novemcinctus | ENSDNOG00000015772 | ortholog_one2one | 1 retrogene | |
| Equus caballus | ENSECAG00000019520 | ortholog_one2one | 1 retrogene | |
| Echinops telfairi | ENSETEG00000020111 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000009083 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000014234 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000022608 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_btau_1285 | 94.62 | 90.91 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSBTAG00000022731 retrocopies