Parental gene:

ZCRB1, ENSBTAG00000019119

Aliases:ZCRB1, MADP-1
Description:Zinc finger CCHC-type and RNA-binding motif-containing protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q56JZ7]
Organism:Cow (Bos taurus)
Coordinates:5:38571961..38589568(+)


>ENSBTAG00000019119
ATGAGTGGTGGATTGGCCCCAAGTAAAAGCACAGTGTATGTATCCAATCTGCCCTTTTCCCTGACCAACAATGACTTATA
TCGGATATTTTCCAAGTATGGCAAAGTTGTAAAGGTTACTATAATGAAAGATAAAGATACCAGAAGGAGTAAAGGGGTTG
CATTTATTTTATTTTTGGATAAAGACTCTGCACAAAACTGTACCCGGGCAATAAACAACAAACAGTTATTTGGTAGAGTG
ATAAAAGCAAGCATTGCTATTGACAATGGAAGAGCAGCTGAGTTCATCCGAAGACGAAACTACTTTGATAAATCTAAGTG
TTATGAATGTGGGGAAAGTGGACACTTAAGTTATGCCTGTCCTAAAAATATGCTTGGAGAACGGGAACCTCCAAAGAAGA
AAGAGAAAAAGAAAAAAAAGAAAATTCCTGAGCCAGAAGAAGAAATTGAAGAAGTAGAAGAAAGTGAAGATGAAGGGGAA
GATCCTGCTCTTGACAGCCTCAGTCAGGCCATAGCTTTCCAGCAAGCCAAAATTGAAGAAGAACAAAAAAAATGGAAACC
CAGTTCAGGAGGTCCTTCAACATCAGATGATTCAAGACGCCCAAGGATAAAGAAAAGCACATACTTCAGTGATGAGGAGG
AACTTAGTGATTAA

Library Parental gene expression (RPM)
SRP017611_brain 13 .52 RPM
SRP017611_kidney 21 .28 RPM
SRP017611_liver 8 .76 RPM
ERP005899_muscle 11 .03 RPM
ERP005899_liver 27 .25 RPM
SRP030211_testis 15 .44 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000004490 ortholog_one2one 1 retrogene
retro_chof_1549,
Callithrix jacchus ENSCJAG00000017749 ortholog_one2one 3 retrogenes
retro_cjac_2009, retro_cjac_2662, retro_cjac_4174,
Cavia porcellus ENSCPOG00000014554 ortholog_one2one 1 retrogene
retro_cpor_757,
Dasypus novemcinctus ENSDNOG00000010107 ortholog_one2one 11 retrogenes
retro_dnov_1075, retro_dnov_1120, retro_dnov_1127, retro_dnov_1357, retro_dnov_1599, retro_dnov_1673, retro_dnov_1846, retro_dnov_2146, retro_dnov_2432, retro_dnov_2466, retro_dnov_888,
Equus caballus ENSECAG00000012174 ortholog_one2one 1 retrogene
retro_ecab_184,
Erinaceus europaeus ENSEEUG00000000397 ortholog_one2one 1 retrogene
retro_eeur_298,
Echinops telfairi ENSETEG00000019302 ortholog_one2one 1 retrogene
retro_etel_2080,
Gorilla gorilla ENSGGOG00000015647 ortholog_one2one 1 retrogene
retro_ggor_3029,
Loxodonta africana ENSLAFG00000008847 ortholog_one2one 2 retrogenes
retro_lafr_1183, retro_lafr_783,
Microcebus murinus ENSMICG00000017422 ortholog_one2one 3 retrogenes
retro_mmur_1236, retro_mmur_236, retro_mmur_466,
Myotis lucifugus ENSMLUG00000001332 ortholog_one2many 3 retrogenes
retro_mluc_2290, retro_mluc_319, retro_mluc_364,
Monodelphis domestica ENSMODG00000008893 ortholog_one2many 1 retrogene
retro_mdom_114,
Mus musculus ENSMUSG00000022635 ortholog_one2one 1 retrogene
retro_mmus_847,
Oryctolagus cuniculus ENSOCUG00000013664 ortholog_one2many 2 retrogenes
retro_ocun_742, retro_ocun_896,
Otolemur garnettii ENSOGAG00000013178 ortholog_one2many 2 retrogenes
retro_ogar_43, retro_ogar_812,
Ochotona princeps ENSOPRG00000011095 ortholog_one2one 2 retrogenes
retro_opri_729, retro_opri_927,
Procavia capensis ENSPCAG00000011749 ortholog_one2one 2 retrogenes
retro_pcap_458, retro_pcap_64,
Pan troglodytes ENSPTRG00000004838 ortholog_one2one 1 retrogene
retro_ptro_3231,
Pteropus vampyrus ENSPVAG00000006651 ortholog_one2one 2 retrogenes
retro_pvam_1343, retro_pvam_697,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_830 69.90 88.02
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2. retro_btau_1637 84.33 100.00
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Download FASTA sequences of all ENSBTAG00000019119 retrocopies