Parental gene:

RPL29, ENSBTAG00000018628

Aliases:None
Description:60S ribosomal protein L29 [Source:UniProtKB/Swiss-Prot;Acc:Q58DW3]
Organism:Cow (Bos taurus)
Coordinates:22:49499797..49501972(+)


>ENSBTAG00000018628
ATGGCCAAGTCCAAGAACCACACCACGCACAACCAGTCCCGAAAATGGCATAGAAACGGCATCAAGAAACCCCGATCACA
ACGATATGAATCTCTTAAGGGGGTAGACCCCAAGTTCCTGAGGAACATGCGCTTTGCCAAGAAGCACAACAAGAAGGGCC
TGAAGAAGATGCAGGCCAACAATGCCAAGGCCATGAGTGCACGTGCTGAGGCTGTCAAGGCCCTCGTGAAGCCCAAGGAG
ATCAAGCCCAAGATGCCAACAGGTGGCAGCCGCAAGCTCAGCCGACTTGCCTACATCGCTCACCCCAAGCTGGGGAAGCG
CGCTCGTGCTCGCATCGCCAAGGGCCTCAGGCTCTGCCGGCCAAAGTCCCAGGCCAAGGCTTCAACCAAGGCCAAGCCAC
CTGCGGCTGCGGCTCCAGCTGCCAAGGGTGCCCAGGCCCCCACCAAAGCTCCGGAGTAG

Library Parental gene expression (RPM)
SRP017611_brain 84 .23 RPM
SRP017611_kidney 166 .73 RPM
SRP017611_liver 103 .52 RPM
ERP005899_muscle 642 .34 RPM
ERP005899_liver 86 .73 RPM
SRP030211_testis 121 .88 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009163 ortholog_one2many 6 retrogenes
retro_amel_1373, retro_amel_1740, retro_amel_345, retro_amel_379, retro_amel_686, retro_amel_913,
Callithrix jacchus ENSCJAG00000005951 possible_ortholog 9 retrogenes
retro_cjac_135, retro_cjac_160, retro_cjac_241, retro_cjac_29, retro_cjac_331, retro_cjac_348, retro_cjac_358, retro_cjac_73, retro_cjac_96,
Felis catus ENSFCAG00000001762 possible_ortholog 9 retrogenes
retro_fcat_1032, retro_fcat_1132, retro_fcat_1753, retro_fcat_1774, retro_fcat_1897, retro_fcat_249, retro_fcat_485, retro_fcat_687, retro_fcat_952,
Gorilla gorilla ENSGGOG00000024691 possible_ortholog 16 retrogenes
retro_ggor_1007, retro_ggor_1090, retro_ggor_1205, retro_ggor_1315, retro_ggor_1330, retro_ggor_142, retro_ggor_1480, retro_ggor_1929, retro_ggor_224, retro_ggor_2247, retro_ggor_254, retro_ggor_2684, retro_ggor_312, retro_ggor_715, retro_ggor_863, retro_ggor_892,
Microcebus murinus ENSMICG00000002705 possible_ortholog 9 retrogenes
retro_mmur_192, retro_mmur_198, retro_mmur_303, retro_mmur_446, retro_mmur_508, retro_mmur_519, retro_mmur_657, retro_mmur_816, retro_mmur_938,
Myotis lucifugus ENSMLUG00000015088 ortholog_one2many 14 retrogenes
retro_mluc_1086, retro_mluc_1160, retro_mluc_134, retro_mluc_1377, retro_mluc_1699, retro_mluc_1955, retro_mluc_2228, retro_mluc_2522, retro_mluc_2523, retro_mluc_2575, retro_mluc_297, retro_mluc_421, retro_mluc_889, retro_mluc_915,
Macaca mulatta ENSMMUG00000019248 possible_ortholog 2 retrogenes
retro_mmul_1352, retro_mmul_218,
Monodelphis domestica ENSMODG00000028750 ortholog_one2many 17 retrogenes
retro_mdom_1013, retro_mdom_1187, retro_mdom_1201, retro_mdom_1328, retro_mdom_1445, retro_mdom_1452, retro_mdom_1505, retro_mdom_1532, retro_mdom_1604, retro_mdom_1665, retro_mdom_1904, retro_mdom_35, retro_mdom_504, retro_mdom_589, retro_mdom_612, retro_mdom_639, retro_mdom_995,
Mustela putorius furo ENSMPUG00000011734 possible_ortholog 6 retrogenes
retro_mputfur_137, retro_mputfur_187, retro_mputfur_370, retro_mputfur_467, retro_mputfur_816, retro_mputfur_970,
Mus musculus ENSMUSG00000048758 possible_ortholog 3 retrogenes
retro_mmus_203, retro_mmus_231, retro_mmus_86,
Otolemur garnettii ENSOGAG00000013766 possible_ortholog 2 retrogenes
retro_ogar_290, retro_ogar_31,
Pongo abelii ENSPPYG00000013818 possible_ortholog 21 retrogenes
retro_pabe_1062, retro_pabe_1162, retro_pabe_1306, retro_pabe_1503, retro_pabe_1714, retro_pabe_1882, retro_pabe_2125, retro_pabe_2131, retro_pabe_2398, retro_pabe_2718, retro_pabe_2952, retro_pabe_3254, retro_pabe_3284, retro_pabe_3504, retro_pabe_3525, retro_pabe_404, retro_pabe_459, retro_pabe_491, retro_pabe_673, retro_pabe_687, retro_pabe_911,
Rattus norvegicus ENSRNOG00000011138 possible_ortholog 15 retrogenes
retro_rnor_1045, retro_rnor_1158, retro_rnor_1161, retro_rnor_1422, retro_rnor_1702, retro_rnor_184, retro_rnor_1951, retro_rnor_2207, retro_rnor_2222, retro_rnor_2356, retro_rnor_2561, retro_rnor_338, retro_rnor_397, retro_rnor_63, retro_rnor_928,
Sorex araneus ENSSARG00000013572 possible_ortholog 8 retrogenes
retro_sara_108, retro_sara_309, retro_sara_329, retro_sara_347, retro_sara_400, retro_sara_53, retro_sara_637, retro_sara_669,
Sarcophilus harrisii ENSSHAG00000006854 ortholog_one2one 2 retrogenes
retro_shar_355, retro_shar_444,
Sus scrofa ENSSSCG00000027573 ortholog_one2one 7 retrogenes
retro_sscr_179, retro_sscr_182, retro_sscr_205, retro_sscr_206, retro_sscr_207, retro_sscr_208, retro_sscr_720,
Ictidomys tridecemlineatus ENSSTOG00000020488 possible_ortholog 14 retrogenes
retro_itri_1345, retro_itri_1433, retro_itri_1482, retro_itri_1586, retro_itri_1664, retro_itri_1667, retro_itri_194, retro_itri_482, retro_itri_520, retro_itri_592, retro_itri_622, retro_itri_874, retro_itri_934, retro_itri_942,
Tursiops truncatus ENSTTRG00000003514 ortholog_one2one 5 retrogenes
retro_ttru_1933, retro_ttru_213, retro_ttru_409, retro_ttru_449, retro_ttru_985,
Vicugna pacos ENSVPAG00000001282 ortholog_one2one 29 retrogenes
retro_vpac_102, retro_vpac_110, retro_vpac_120, retro_vpac_148, retro_vpac_155, retro_vpac_176, retro_vpac_188, retro_vpac_199, retro_vpac_243, retro_vpac_264, retro_vpac_28, retro_vpac_302, retro_vpac_305, retro_vpac_317, retro_vpac_325, retro_vpac_40, retro_vpac_401, retro_vpac_41, retro_vpac_416, retro_vpac_453, retro_vpac_462, retro_vpac_481, retro_vpac_547, retro_vpac_575, retro_vpac_58, retro_vpac_60, retro_vpac_602, retro_vpac_636, retro_vpac_98,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_982 67.95 100.00
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Download FASTA sequences of all ENSBTAG00000018628 retrocopies