Parental gene: | SF3B4, ENSBTAG00000012495 |
| Aliases: | None |
| Description: | splicing factor 3B subunit 4 [Source:RefSeq peptide;Acc:NP_001192513] |
| Organism: | Cow (Bos taurus) |
| Coordinates: | 3:20727609..20731285(+) |
>ENSBTAG00000012495
ATGGCGGCCGGGCCGATCTCCGAGCGAAACCAGGATGCCACTGTGTACGTGGGGGGCCTCGATGAGAAGGTTAGCGAACC
ACTGCTGTGGGAACTATTTCTCCAGGCAGGGCCAGTAGTGAACACGCACATGCCAAAAGATAGAGTCACTGGTCAGCACC
AAGGCTATGGCTTTGTGGAATTCTTGAGTGAGGAAGATGCTGACTATGCCATTAAGATCATGAACATGATCAAACTCTAT
GGGAAGCCAATACGGGTGAACAAGGCATCAGCTCACAACAAAAACCTGGATGTGGGGGCCAACATTTTTATTGGGAACCT
GGACCCAGAGATTGATGAGAAGTTGCTTTATGATACTTTTAGCGCCTTTGGGGTCATCTTACAAACCCCCAAGATTATGC
GGGACCCTGACACAGGCAACTCCAAAGGTTATGCCTTTATTAATTTTGCTTCATTTGATGCTTCGGATGCAGCGATTGAG
GCCATGAATGGGCAGTACCTCTGTAACCGCCCAATCACTGTGTCCTACGCATTCAAGAAGGACTCCAAGGGTGAGCGCCA
TGGCTCAGCCGCTGAAAGACTTCTGGCAGCACAGAACCCACTCTCCCAGGCTGACCGCCCTCATCAGCTGTTTGCAGATG
CACCCCCTCCACCATCTGCTCCCAATCCTGTGGTATCATCATTGGGATCTGGGCTTCCTCCACCAGGCATGCCTCCTCCT
GGCTCCTTCCCACCTCCAGTACCGCCTCCTGGAGCCCTTCCTCCTGGGATACCCCCAGCCATGCCACCACCACCTATGCC
TCCTGGGGCTGGAGGACATGGCCCCCCATCAGCGGGAACCCCAGGGGCTGGACATCCTGGACACGGACATTCACATCCTC
ACCCATTCCCACCGGGTGGGATGCCCCATCCAGGGATGTCTCAGATGCAGCTGGCCCACCATGGCCCTCATGGCTTAGGG
CACCCCCACGCTGGGCCCCCTGGCTCTGGGGGGCAGCCACCACCCCGACCACCACCTGGAATGCCTCATCCTGGACCTCC
TCCAATGGGGATGCCCCCCCGAGGGCCTCCGTTTGGCTCTCCTATGGGTCACCCAGGTCCTATGCCTCCGCATGGTATGC
GTGGACCTCCTCCACTGATGCCTCCTCATGGATACACTGGCCCTCCACGACCTCCACCCTACGGCTACCAGCGGGGGCCC
CTCCCTCCACCCAGACCCACTCCCCGACCTCCAGTGCCCCCTCGAGGCCCACTTCGAGGCCCTCTCCCTCAGTGA
ATGGCGGCCGGGCCGATCTCCGAGCGAAACCAGGATGCCACTGTGTACGTGGGGGGCCTCGATGAGAAGGTTAGCGAACC
ACTGCTGTGGGAACTATTTCTCCAGGCAGGGCCAGTAGTGAACACGCACATGCCAAAAGATAGAGTCACTGGTCAGCACC
AAGGCTATGGCTTTGTGGAATTCTTGAGTGAGGAAGATGCTGACTATGCCATTAAGATCATGAACATGATCAAACTCTAT
GGGAAGCCAATACGGGTGAACAAGGCATCAGCTCACAACAAAAACCTGGATGTGGGGGCCAACATTTTTATTGGGAACCT
GGACCCAGAGATTGATGAGAAGTTGCTTTATGATACTTTTAGCGCCTTTGGGGTCATCTTACAAACCCCCAAGATTATGC
GGGACCCTGACACAGGCAACTCCAAAGGTTATGCCTTTATTAATTTTGCTTCATTTGATGCTTCGGATGCAGCGATTGAG
GCCATGAATGGGCAGTACCTCTGTAACCGCCCAATCACTGTGTCCTACGCATTCAAGAAGGACTCCAAGGGTGAGCGCCA
TGGCTCAGCCGCTGAAAGACTTCTGGCAGCACAGAACCCACTCTCCCAGGCTGACCGCCCTCATCAGCTGTTTGCAGATG
CACCCCCTCCACCATCTGCTCCCAATCCTGTGGTATCATCATTGGGATCTGGGCTTCCTCCACCAGGCATGCCTCCTCCT
GGCTCCTTCCCACCTCCAGTACCGCCTCCTGGAGCCCTTCCTCCTGGGATACCCCCAGCCATGCCACCACCACCTATGCC
TCCTGGGGCTGGAGGACATGGCCCCCCATCAGCGGGAACCCCAGGGGCTGGACATCCTGGACACGGACATTCACATCCTC
ACCCATTCCCACCGGGTGGGATGCCCCATCCAGGGATGTCTCAGATGCAGCTGGCCCACCATGGCCCTCATGGCTTAGGG
CACCCCCACGCTGGGCCCCCTGGCTCTGGGGGGCAGCCACCACCCCGACCACCACCTGGAATGCCTCATCCTGGACCTCC
TCCAATGGGGATGCCCCCCCGAGGGCCTCCGTTTGGCTCTCCTATGGGTCACCCAGGTCCTATGCCTCCGCATGGTATGC
GTGGACCTCCTCCACTGATGCCTCCTCATGGATACACTGGCCCTCCACGACCTCCACCCTACGGCTACCAGCGGGGGCCC
CTCCCTCCACCCAGACCCACTCCCCGACCTCCAGTGCCCCCTCGAGGCCCACTTCGAGGCCCTCTCCCTCAGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 24 .48 RPM |
| SRP017611_kidney | 30 .58 RPM |
| SRP017611_liver | 12 .31 RPM |
| ERP005899_muscle | 22 .75 RPM |
| ERP005899_liver | 8 .44 RPM |
| SRP030211_testis | 85 .73 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000011617 | ortholog_one2one | 3 retrogenes | |
| Callithrix jacchus | ENSCJAG00000000793 | ortholog_one2one | 3 retrogenes | |
| Cavia porcellus | ENSCPOG00000008267 | ortholog_one2one | 1 retrogene | |
| Echinops telfairi | ENSETEG00000008963 | ortholog_one2one | 1 retrogene | |
| Felis catus | ENSFCAG00000010106 | possible_ortholog | 1 retrogene | |
| Homo sapiens | ENSG00000143368 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000004761 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000007256 | ortholog_one2one | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000005563 | ortholog_one2one | 2 retrogenes | |
| Mus musculus | ENSMUSG00000068856 | possible_ortholog | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000004614 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000006265 | possible_ortholog | 3 retrogenes | |
| Pongo abelii | ENSPPYG00000000912 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000001243 | ortholog_one2one | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000014171 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000021181 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000000684 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_btau_592 | 75.89 | 58.02 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_btau_1385 | 97.65 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSBTAG00000012495 retrocopies