Parental gene:

NUCKS1, ENSBTAG00000008001

Aliases:None
Description:Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 [Source:UniProtKB/Swiss-Prot;Acc:Q29S11]
Organism:Cow (Bos taurus)
Coordinates:16:3301672..3329235(-)


>ENSBTAG00000008001
ATGTCTCGGCCTGTCAGAAATAGGAAGGTCGTTGATTATTCACAGTTTCAGGAATCCGATGATGCTGATGAAGATTATGG
AAGAGATTCAGGCCCTCCAGCTAAGAAAATTCGATCATCTCCCCGAGAAGCTAAAAATAAGAGGCGATCTGGAAAGAATT
CACAGGAAGATAGTGAGGACTCAGAAGAAAAAGATGTGAAGACTAAGAAGGATGATTCTCATTCAGCAGAGGACAGTGAA
GATGAAAAAGAAGATCATAAAAACGTGCGCCAGCAACGGCAGGCAGCCTCTAAAGCAGCCTCTAAACAGAGGGAGATGCT
CATGGAAGATGTGGGCAGTGAGGAGGAGCAAGAAGAGGAGGACGAGGCGCCGTTCCAGGAGAAAGATTCCGGCAGTGATG
AGGATTTCCTAGTAGAAGACGATGATGATAGTGACTATGGCAGTTCAAAAAAGAAAAACAAAAAGATGGTTAAGAAGTCG
AAGCCTGAGAGAAAAGAAAAGAAAATGCCGAAGCCCAGGCTAAAGGCCACAGTGACGCCAAGTCCTGTGAAAGGCAAGGG
GAAAGTGGGTCGCCCCACAGCTTCAAAGGCATCAAAGGAAAAGACTCCTTCTCCCAAAGAAGAAGATGAGGAACCAGAAA
GCCCTCTGGAAAAGAAAGCATCTTCAAGCCCTCCACCTGAGAAATCTGGGGATGAAGGTTCTGAAGATGACGCGCAGTCT
GGGGAAGATTAA

Library Parental gene expression (RPM)
SRP017611_brain 118 .45 RPM
SRP017611_kidney 129 .21 RPM
SRP017611_liver 66 .98 RPM
ERP005899_muscle 78 .55 RPM
ERP005899_liver 95 .82 RPM
SRP030211_testis 33 .94 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000012950 ortholog_one2one 1 retrogene
retro_amel_339,
Choloepus hoffmanni ENSCHOG00000001855 ortholog_one2one 1 retrogene
retro_chof_437,
Dasypus novemcinctus ENSDNOG00000017212 ortholog_one2many 2 retrogenes
retro_dnov_348, retro_dnov_6,
Dipodomys ordii ENSDORG00000003183 ortholog_one2one 1 retrogene
retro_dord_688,
Homo sapiens ENSG00000069275 ortholog_one2one 1 retrogene
retro_hsap_521,
Gorilla gorilla ENSGGOG00000026655 ortholog_one2one 1 retrogene
retro_ggor_480,
Macropus eugenii ENSMEUG00000007829 ortholog_one2one 2 retrogenes
retro_meug_2015, retro_meug_372,
Macaca mulatta ENSMMUG00000005645 ortholog_one2one 1 retrogene
retro_mmul_422,
Monodelphis domestica ENSMODG00000001832 ortholog_one2many 1 retrogene
retro_mdom_980,
Nomascus leucogenys ENSNLEG00000014564 ortholog_one2one 1 retrogene
retro_nleu_2576,
Pan troglodytes ENSPTRG00000001904 ortholog_one2one 1 retrogene
retro_ptro_389,
Rattus norvegicus ENSRNOG00000047287 ortholog_one2one 2 retrogenes
retro_rnor_2337, retro_rnor_2338,
Tupaia belangeri ENSTBEG00000015641 ortholog_one2one 1 retrogene
retro_tbel_2591,
Tarsius syrichta ENSTSYG00000000910 ortholog_one2one 1 retrogene
retro_tsyr_987,
Vicugna pacos ENSVPAG00000003751 ortholog_one2one 1 retrogene
retro_vpac_313,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_541 93.00 100.00
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Download FASTA sequences of all ENSBTAG00000008001 retrocopies