Parental gene: | ATXN3, ENSBTAG00000005786 |
| Aliases: | None |
| Description: | ataxin-3 [Source:RefSeq peptide;Acc:NP_001092686] |
| Organism: | Cow (Bos taurus) |
| Coordinates: | 21:57347864..57381142(-) |
>ENSBTAG00000005786
ATGGAGTCCATCTTCCACGAAAAACAAGAAGGCTCACTTTGTGCTCAACATTGCTTGAATAACCTACTGCAAGGAGAATA
CTTCAGCCCTGTGGAATTATCTTCAATTGCACATCAGCTAGATGAGGAAGAGAGGATGAGAATGGCAGAAGGAGGAGTTA
CTAGTGAAGACTATCGCACATTTTTGCAGCAGCCTTCTGGAAATATGGATGACAGTGGCTTTTTCTCTATTCAACAGGTT
ATAAGCAATGCCTTGAAAGTTTGGGGTTTAGAACTAATCCTGTTTAACAGTCCAGAGTACCAGAGGCTCAGGATTGATCC
CATAAATGAAAGATCATTTATATGCAACTATAAAGAACACTGGTTTACAGTTAGAAAATTAGGAAAACAGTGGTTCAACT
TGAATTCTCTTTTGACGGGTCCAGAATTAATATCAGACACATACCTTGCACTTTTCTTGGCTCAGTTACAACAGGAAGGT
TACTCTATATTTGTTGTTAAGGGTGATCTGCCAGATTGTGAGGCTGACCAACTTCTACAGATGATCAGGGTCCAACAGAT
GCATCGACCAAAACTTATTGGAGAAGAATTAGCACAACTTAAAGAACAGAGAGTCCAGAAAACAGATCTAGAACACGTCT
TAGAAGTAAATGATGGGACAGGAATGTTAGATGAGGATGAGGAGGAATTGCAGAGGGCTCTGGCACTAAGTCGCCAAGAA
ATTGACATGGAAGATGAAGAAGCTGATCTCCGCAGGGCCATTCAGCTCAGTATGCAAGGTACTTCCAGAAATAGATGTCA
AGATATCCCACAGACATCGGGTTCACATCCTACTTCAGAAGAGCTACGGAAGAGAAGAGAAGCCTACTTTGAAAAGGAGA
GAAACAAGGAAAAAAAAATACAGGGAGAATTGACTTTAATGCAGCAGCAGCAGCAGCAGCAACAACCAGCTCCGCCAGGA
CAGCTTACACATCTGTGTGAAAAGTCCAGCACAAGCTGCGAAGCACCTGACCGCGATCTAGGTGATTCTATGAGTGAAGA
AGACATGCTTCAGGCAGCTGTGACCATGTCTTTAGAAACTGTTAGAAGTAAAACAGAAGGAAAAAAGTAA
ATGGAGTCCATCTTCCACGAAAAACAAGAAGGCTCACTTTGTGCTCAACATTGCTTGAATAACCTACTGCAAGGAGAATA
CTTCAGCCCTGTGGAATTATCTTCAATTGCACATCAGCTAGATGAGGAAGAGAGGATGAGAATGGCAGAAGGAGGAGTTA
CTAGTGAAGACTATCGCACATTTTTGCAGCAGCCTTCTGGAAATATGGATGACAGTGGCTTTTTCTCTATTCAACAGGTT
ATAAGCAATGCCTTGAAAGTTTGGGGTTTAGAACTAATCCTGTTTAACAGTCCAGAGTACCAGAGGCTCAGGATTGATCC
CATAAATGAAAGATCATTTATATGCAACTATAAAGAACACTGGTTTACAGTTAGAAAATTAGGAAAACAGTGGTTCAACT
TGAATTCTCTTTTGACGGGTCCAGAATTAATATCAGACACATACCTTGCACTTTTCTTGGCTCAGTTACAACAGGAAGGT
TACTCTATATTTGTTGTTAAGGGTGATCTGCCAGATTGTGAGGCTGACCAACTTCTACAGATGATCAGGGTCCAACAGAT
GCATCGACCAAAACTTATTGGAGAAGAATTAGCACAACTTAAAGAACAGAGAGTCCAGAAAACAGATCTAGAACACGTCT
TAGAAGTAAATGATGGGACAGGAATGTTAGATGAGGATGAGGAGGAATTGCAGAGGGCTCTGGCACTAAGTCGCCAAGAA
ATTGACATGGAAGATGAAGAAGCTGATCTCCGCAGGGCCATTCAGCTCAGTATGCAAGGTACTTCCAGAAATAGATGTCA
AGATATCCCACAGACATCGGGTTCACATCCTACTTCAGAAGAGCTACGGAAGAGAAGAGAAGCCTACTTTGAAAAGGAGA
GAAACAAGGAAAAAAAAATACAGGGAGAATTGACTTTAATGCAGCAGCAGCAGCAGCAGCAACAACCAGCTCCGCCAGGA
CAGCTTACACATCTGTGTGAAAAGTCCAGCACAAGCTGCGAAGCACCTGACCGCGATCTAGGTGATTCTATGAGTGAAGA
AGACATGCTTCAGGCAGCTGTGACCATGTCTTTAGAAACTGTTAGAAGTAAAACAGAAGGAAAAAAGTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 3 .33 RPM |
| SRP017611_kidney | 5 .81 RPM |
| SRP017611_liver | 2 .19 RPM |
| ERP005899_muscle | 5 .65 RPM |
| ERP005899_liver | 2 .81 RPM |
| SRP030211_testis | 80 .91 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000005302 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000018025 | ortholog_one2many | 2 retrogenes | |
| Cavia porcellus | ENSCPOG00000010887 | ortholog_one2many | 1 retrogene | |
| Homo sapiens | ENSG00000066427 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000020751 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000002006 | ortholog_one2one | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000017126 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000006075 | ortholog_one2one | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000015316 | ortholog_one2one | 2 retrogenes | |
| Tupaia belangeri | ENSTBEG00000008099 | ortholog_one2one | 3 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_btau_330 | 97.60 | 79.13 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_btau_1652 | 93.49 | 79.13 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSBTAG00000005786 retrocopies