Parental gene:

AP3S2, ENSBTAG00000001407

Aliases:None
Description:AP-3 complex subunit sigma-2 [Source:UniProtKB/Swiss-Prot;Acc:Q1JQA3]
Organism:Cow (Bos taurus)
Coordinates:21:21679212..21720406(-)


>ENSBTAG00000001407
ATGATTCAGGCGATTCTGGTTTTCAATAACCACGGGAAGCCGCGGCTGGTCCGCTTCTACCAGCGTTTCCCAGAAGAAAT
TCAGCAGCAGATTGTTCGAGAGACCTTTCATCTAGTTCTCAAGCGGGATGACAACATCTGTAACTTCTTGGAGGGTGGAA
GTTTGATTGGTGGCTCTGACTACAAACTGATTTATCGGCATTATGCTACCCTCTACTTTGTATTTTGTGTGGATTCCTCA
GAAAGTGAACTTGGGATCTTGGACCTCATCCAGGTTTTCGTGGAGACTCTGGACAAGTGTTTTGAGAATGTTTGTGAATT
GGATTTGATCTTCCATATGGATAAGGTACACTACATCCTTCAGGAGGTGGTGATGGGTGGGATGGTCCTGGAAACAAACA
TGAATGAGATCGTGGCTCAGATTGAAGCCCAGAACAGGCTGGAGAAGTCCGAGGGTGGCCTTTCAGCCGCACCTGCCCGG
GCGGTGTCCGCTGTGAAGAACATCAACCTGCCAGAGATGCCCCGGAACATCAACATTGGCGATCTCAACATCAAGGTCCC
CAACCTGTCCCAGTTTGTCTGA

Library Parental gene expression (RPM)
SRP017611_brain 33 .48 RPM
SRP017611_kidney 48 .25 RPM
SRP017611_liver 21 .14 RPM
ERP005899_muscle 31 .78 RPM
ERP005899_liver 7 .35 RPM
SRP030211_testis 21 .58 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000003359 ortholog_one2one 4 retrogenes
retro_chof_1775, retro_chof_194, retro_chof_434, retro_chof_88,
Dipodomys ordii ENSDORG00000004247 ortholog_one2one 1 retrogene
retro_dord_115,
Equus caballus ENSECAG00000024044 ortholog_one2one 1 retrogene
retro_ecab_549,
Felis catus ENSFCAG00000028122 ortholog_one2one 1 retrogene
retro_fcat_311,
Macropus eugenii ENSMEUG00000003421 ortholog_one2one 1 retrogene
retro_meug_2032,
Monodelphis domestica ENSMODG00000019522 ortholog_one2one 1 retrogene
retro_mdom_316,
Nomascus leucogenys ENSNLEG00000011780 ortholog_one2one 2 retrogenes
retro_nleu_1380, retro_nleu_1555,
Otolemur garnettii ENSOGAG00000030982 ortholog_one2one 1 retrogene
retro_ogar_1737,
Rattus norvegicus ENSRNOG00000043141 ortholog_one2one 1 retrogene
retro_rnor_931,
Sus scrofa ENSSSCG00000030174 ortholog_one2one 7 retrogenes
retro_sscr_1109, retro_sscr_199, retro_sscr_268, retro_sscr_339, retro_sscr_620, retro_sscr_721, retro_sscr_753,
Tursiops truncatus ENSTTRG00000015554 ortholog_one2one 2 retrogenes
retro_ttru_1233, retro_ttru_1361,
Vicugna pacos ENSVPAG00000008668 ortholog_one2one 1 retrogene
retro_vpac_54,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_436 83.25 98.96
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Download FASTA sequences of all ENSBTAG00000001407 retrocopies