Parental gene:

Bra030855

Aliases:None
Description:AT1G55520 (E=3e-106) TBP2, ATTBP2 | TBP2 (TATA BINDING PROTEIN 2); DNA binding / RNA polymerase II transcription factor/ TATA-binding protein binding
Organism:Chinese cabbage (Brassica rapa)
Coordinates:A08:335153..336464(+)


>Bra030855
ATGGCTGAACAAGGAATGGAGGGGAGTCAACCAGTTGACCTTATGAAGCATCCTTCAGGGATTATTCCAACTCTTCAAAA
CATTGTCTCGACAGTGAACTTGGACTGCAAGCTTGATCTCAAATCCATAGCTTTGCAGGCTCGCAACGCTGAATATAACC
CCAAGCGTTTTGCTGCAGTAATCATGAGGATAAGAGAGCCAAAGACTACAGCGTTGATCTTTGCTTCTGGGAAAATGGTG
TGTACCGGAGCTAAGAGTGAACATTTTTCAAAGCTGGCTGCGAGAAAGTACGCTCGGATTGTTCAAAAGCTTGGCTTTCC
TGCAAAGTTCAAGGATTTCAAGATTCAGAACATTGTAGGGTCTTGTGATGTCAAATTCCCCATTAGGCTTGAAGGTCTTG
CATACTCTCACAGTGCTTTCTCAAGTTACGAGCCTGAGCTGTTCCCAGGACTGATATATAGGATGAAACAACCAAAGATT
GTGCTACTGATTTTCGTGTCAGGGAAGATTGTTATAACTGGAGCCAAGATGAGAGAAGAGACTTACACGGCCTTTGAGAA
TATCTACCCAGTTCTTACAGAGTTTAGGAAAATCCAGCAATGA

Species Parental gene accession Homology type Retrogenes number
Brassica rapa Bra027434 within_species_paralog 2 retrogenes
retro_brap_12, retro_brap_9,
Theobroma cacao TCM_026453 ortholog_one2many 1 retrogene
retro_tcac_19,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_brap_53 79.14 79.50
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Download FASTA sequences of all Bra030855 retrocopies