Parental gene: | TBP1, Bra027434 |
| Aliases: | None |
| Description: | AT3G13445 (E=5e-108) TBP1, TFIID-1 | TBP1 (TATA BINDING PROTEIN 1); DNA binding / RNA polymerase II transcription factor/ binding |
| Organism: | Chinese cabbage (Brassica rapa) |
| Coordinates: | A05:20901484..20902790(-) |
>Bra027434
ATGACAGATCAAGGATTGGAAGGGAGTAATCCAGTGGACCTAGCCGAGCATCCTTCAGGGATTGTACCTACTCTTCAGAA
CATTGTGTCGACGGTGAACTTGGACTGCAAGCTAGATCTTAAAGCCATCGCTTTGCAAGCTCGTAATGCTGAATACAATC
CTAAGCGTTTTGCTGCTGTGATCATGCGGATTAGAGAACCAAAGACTACAGCATTAATTTTTGCCTCTGGTAAAATGGTT
TGTACTGGAGCCAAGAGTGAATACTTTTCAAAGATGGCTGCAAGAAAGTATGCTCGGATTGTCCAAAAGCTTGGTTTTCC
TGCAAAGTTCAAGGATTTCAAGATTCAGAATATAGTAGGTTCTTGTGATGTCAAGTTCCCTATCAGACTTGAAGGTCTTG
CATACTCTCACGCCGCTTTCTCAAGTTACGAGCCTGAGTTGTTTCCGGGGCTAATCTACAGGATGAAAGTGCCTAAGATT
GTGCTACTAATTTTTGTGTCTGGCAAGATAGTCATCACTGGAGCCAAGATGAGAGAGGAGACTTACAAAGCCTTTGAGAA
TATATACCCGGTCCTCACGGAGTTCAGGAAGATCCAGCAATAG
ATGACAGATCAAGGATTGGAAGGGAGTAATCCAGTGGACCTAGCCGAGCATCCTTCAGGGATTGTACCTACTCTTCAGAA
CATTGTGTCGACGGTGAACTTGGACTGCAAGCTAGATCTTAAAGCCATCGCTTTGCAAGCTCGTAATGCTGAATACAATC
CTAAGCGTTTTGCTGCTGTGATCATGCGGATTAGAGAACCAAAGACTACAGCATTAATTTTTGCCTCTGGTAAAATGGTT
TGTACTGGAGCCAAGAGTGAATACTTTTCAAAGATGGCTGCAAGAAAGTATGCTCGGATTGTCCAAAAGCTTGGTTTTCC
TGCAAAGTTCAAGGATTTCAAGATTCAGAATATAGTAGGTTCTTGTGATGTCAAGTTCCCTATCAGACTTGAAGGTCTTG
CATACTCTCACGCCGCTTTCTCAAGTTACGAGCCTGAGTTGTTTCCGGGGCTAATCTACAGGATGAAAGTGCCTAAGATT
GTGCTACTAATTTTTGTGTCTGGCAAGATAGTCATCACTGGAGCCAAGATGAGAGAGGAGACTTACAAAGCCTTTGAGAA
TATATACCCGGTCCTCACGGAGTTCAGGAAGATCCAGCAATAG
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Brassica rapa | Bra030855 | within_species_paralog | 1 retrogene | |
| Theobroma cacao | TCM_026453 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_brap_9 | 83.00 | 99.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_brap_12 | 82.80 | 78.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all Bra027434 retrocopies