RetrogeneDB ID: retro_ttru_1376

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: scaffold_111647:152096..152508(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: OOEP
• Ensembl ID: ENSTTRG00000001487
• Aliases: None
• Description: oocyte expressed protein [Source:HGNC Symbol;Acc:21382]

Sequence

>retro_ttru_1376
GACTACGCGGGCGCTGCCGAGGCTCTGGGGGACGGGCTGCTGGGGTTTCCACTTCCGCCGCCACGGATTCGCTCCCGGCC
GTGGTGGTTTCCTGTGCAGAACCTGAGGAACCTGCTGGTGTTTTATTTGGAGGCGTGGCTGGCCGACTCGATCTTCGGCC
CAGGCCGAGCCGTGGTTCCGGAAATGGAGTGGATGAGCCAGGCCCTGCTGACGGTGGACGCAGTTCACGCCGGGAAGTTG
GTGGAAATCACCGTCTTCGGGCCGCCGGCTGTCCAGCGCCGGGTGAAGAGCGTGCTCTGAGCCTGGTGCCGAGTCACCGG
GAGCAGCGCGCCCGAGCTGAGAAGATGGAACAACTCGAGGAGTTCTGAAGGCGCAGGCACCAGGCCCCCAGATCCCCCAG
CGTCCTGTTGCG

Alignment

ORF - retro_ttru_1376 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 86.43 %
• Parental protein coverage: 98.57 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  DDAGAAEGRGDGLLGFLFTPPRIRSRPWWFPVQELRNPLVFSLEAWLADSIFGPDRAVVPEMEWMSQALL
          D.AGAAE..GDGLLGF...PPRIRSRPWWFPVQ.LRN.LVF.LEAWLADSIFGP.RAVVPEMEWMSQALL
Retrocopy DYAGAAEALGDGLLGFPLPPPRIRSRPWWFPVQNLRNLLVFYLEAWLADSIFGPGRAVVPEMEWMSQALL

Parental  TVDAVHAGKLVEITVFGRPAVQRRVKSVL-LSLASSHREKRARAEKMEQLEEF-LKAQAPRPQVPQSPVA
          TVDAVHAGKLVEITVFG.PAVQRRVKSVL.LSL..SHRE.RARAEKMEQLEEF.LKAQAP.PQ.PQ.PVA
Retrocopy TVDAVHAGKLVEITVFGPPAVQRRVKSVL<LSLVPSHREQRARAEKMEQLEEF<LKAQAPGPQIPQRPVA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_1376 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_1376 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 11 parental genes, and 22 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000009962	1 retrocopy	retro_cjac_3033,
Homo sapiens	ENSG00000203907	3 retrocopies	retro_hsap_432, retro_hsap_4807, retro_hsap_543,
Gorilla gorilla	ENSGGOG00000016832	3 retrocopies	retro_ggor_2992, retro_ggor_422, retro_ggor_495,
Loxodonta africana	ENSLAFG00000012754	2 retrocopies	retro_lafr_412, retro_lafr_782,
Myotis lucifugus	ENSMLUG00000017174	2 retrocopies	retro_mluc_115, retro_mluc_252,
Macaca mulatta	ENSMMUG00000000416	2 retrocopies	retro_mmul_2561, retro_mmul_519,
Nomascus leucogenys	ENSNLEG00000001204	2 retrocopies	retro_nleu_2182, retro_nleu_717,
Oryctolagus cuniculus	ENSOCUG00000025904	1 retrocopy	retro_ocun_20,
Pan troglodytes	ENSPTRG00000029545	3 retrocopies	retro_ptro_3197, retro_ptro_329, retro_ptro_408,
Rattus norvegicus	ENSRNOG00000025957	1 retrocopy	retro_rnor_2192,
Tursiops truncatus	ENSTTRG00000001487	2 retrocopies	retro_ttru_1376 , retro_ttru_1803,