RetrogeneDB ID: retro_tsyr_146

Retrocopy location

• Organism: Tarsier (Tarsius syrichta)
• Coordinates: GeneScaffold_3846:5897..6283(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: NUDT15
• Ensembl ID: ENSTSYG00000006960
• Aliases: None
• Description: nudix (nucleoside diphosphate linked moiety X)-type motif 15 [Source:HGNC Symbol;Acc:23063]

Sequence

>retro_tsyr_146
TCATTTGGAGCTGGCAGTTTCCAGTTTCCTGGGGGTCATTCGGAGTTTGGTGAGAGCTGGGAAGAATGTGATCACAGGGA
AACCAGAAAAGCAGCAGCTCTTCATCTAAAACATGCTAATTTTGCCTCAGTTGTGACTTCTTTCATTGAGAAAGATAATT
ACCATTATGTTACTAGATTAATGAAAGGAGAGGTAGATGTGACTCGTGATTCAGAATCAAGAATGTAGAGCCTGAATTAA
ACAAAAGTTGGGAGTGCATTCCCTGGGAAGAATTTCCTGTACTAGACCAGCTTTGCCAGGTACTATGCTGTTTAAAGGAA
CAAGGCTATAATCCATTTGAAGAAGTTTTAAACCATCTGATAGGATACAAAGGAAATCATCTCAAG

Alignment

ORF - retro_tsyr_146 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 73.85 %
• Parental protein coverage: 78.18 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  SVGAGSFQLPGGHLEFGETWEECALRETWEEAALHLKNVHFASVVNSFVEKENYHYVTILMKGEVDVTHD
          S.GAGSFQ.PGGH.EFGE.WEEC..RET...AALHLK...FASVV.SF.EK.NYHYVT.LMKGEVDVT.D
Retrocopy SFGAGSFQFPGGHSEFGESWEECDHRETRKAAALHLKHANFASVVTSFIEKDNYHYVTRLMKGEVDVTRD

Parental  SEP-KNVEPEKNESWEWVPWDEFPPLDQLFWALRCLKEQGYDPFKEDLNHLVGYKGNHLQ
          SE..KNVEPE.N.SWE..PW.EFP.LDQL...L.CLKEQGY.PF.E.LNHL.GYKGNHL.
Retrocopy SES<KNVEPELNKSWECIPWEEFPVLDQLCQVLCCLKEQGYNPFEEVLNHLIGYKGNHLK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq

Tarsius syrichta was not studied using ChIP-Seq data.

EST

Tarsius syrichta was not studied using EST data.

TSS

Tarsius syrichta was not studied using FANTOM5 data.

Lab

retro_tsyr_146 was not experimentally validated.

Homology

Retrocopy orthology:

Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 15 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000019501	1 retrocopy	retro_btau_559,
Callithrix jacchus	ENSCJAG00000009274	1 retrocopy	retro_cjac_1497,
Homo sapiens	ENSG00000136159	2 retrocopies	retro_hsap_1822, retro_hsap_4063,
Gorilla gorilla	ENSGGOG00000008232	3 retrocopies	retro_ggor_2171, retro_ggor_2257, retro_ggor_2729,
Microcebus murinus	ENSMICG00000009583	1 retrocopy	retro_mmur_962,
Mus musculus	ENSMUSG00000033405	1 retrocopy	retro_mmus_1923,
Nomascus leucogenys	ENSNLEG00000002957	2 retrocopies	retro_nleu_2878, retro_nleu_563,
Pongo abelii	ENSPPYG00000005353	2 retrocopies	retro_pabe_1490, retro_pabe_3337,
Pan troglodytes	ENSPTRG00000042329	1 retrocopy	retro_ptro_82,
Tarsius syrichta	ENSTSYG00000006960	1 retrocopy	retro_tsyr_146 ,