RetrogeneDB ID: retro_sara_708

Retrocopy location

• Organism: Shrew (Sorex araneus)
• Coordinates: scaffold_261324:117534..117837(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSSARG00000002056
• Aliases: None
• Description: None

Sequence

>retro_sara_708
ATGAATTTGGAGTGGGTACCAAATGACGACAAGTTGAATCTGTGCCGGAAGTACTATCTGGATGGCTTTGCTTTCCTACC
TTTTCTCTGGTTGGTAAACATCTTCTGTTCTTTAGAGAGGTCGTCATTGTCCCCCGCATACACTGAACAGAGCCAAATCA
AGGGCGATGTCTGTCGCTCAGCTGTGGGTTTCCTCTTCTGAGTGATTGTACTCATTCCCCGGATCATCATCTTCCAGATC
TACTGGCCCAGTTGAGGTTCCCTAGGGAACTACCTCTCCTTCATCATGCCCCTGGGAAACCCC

Alignment

ORF - retro_sara_708 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 76.7 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  MNLERVSNEEKLNLCRKYYLGGFAFLPFLWLVNIF-WFFREAFIV-PAYTEQSQIKGYVCRSAVGFLFWV
          MNLE.V.N..KLNLCRKYYL.GFAFLPFLWLVNIF..FFRE..IV.PAYTEQSQIKG.VCRSAVGFLF.V
Retrocopy MNLEWVPNDDKLNLCRKYYLDGFAFLPFLWLVNIF<LFFREVVIV>PAYTEQSQIKGDVCRSAVGFLF*V

Parental  IVLTTWITIFQIYRPRWGALGDYLSFTIPLGTP
          IVL...I.IFQIY.P..G.LG.YLSF..PLG.P
Retrocopy IVLIPRIIIFQIYWPS*GSLGNYLSFIMPLGNP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Sorex araneus was not studied using RNA-Seq expression data.

ChIP-Seq

Sorex araneus was not studied using ChIP-Seq data.

EST

Sorex araneus was not studied using EST data.

TSS

Sorex araneus was not studied using FANTOM5 data.

Lab

retro_sara_708 was not experimentally validated.

Homology

Retrocopy orthology:

Sorex araneus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 7 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Erinaceus europaeus	ENSEEUG00000002930	1 retrocopy	retro_eeur_7,
Macropus eugenii	ENSMEUG00000012358	1 retrocopy	retro_meug_524,
Myotis lucifugus	ENSMLUG00000011528	2 retrocopies	retro_mluc_1385, retro_mluc_1860,
Mus musculus	ENSMUSG00000036835	2 retrocopies	retro_mmus_1415, retro_mmus_2454,
Sorex araneus	ENSSARG00000002056	1 retrocopy	retro_sara_708 ,
Sus scrofa	ENSSSCG00000024330	1 retrocopy	retro_sscr_664,
Tupaia belangeri	ENSTBEG00000001589	1 retrocopy	retro_tbel_447,