RetrogeneDB ID: retro_mluc_1860

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429931:106214..106516(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: PSENEN
• Ensembl ID: ENSMLUG00000011528
• Aliases: None
• Description: None

Sequence

>retro_mluc_1860
GTGAACTTGGAGTGGGTGTCCAATAATTGAAGTTGAACCTATGCCAAAAATACTGCCTGGGTGGGTTTGCTTTCCTGCCT
TTTCCCTGGCTGGTCAACATCTTCTGGTTTTTCTGAGAAGCCTTCCTTGTCCCAGCATACACAGAGCAGAGTCAAACCAA
AGGCTATGTCCTGCACTTAGCTGTGGACTTTCTCTTCTGGGTGACTGTACTCCACACCTGGATCACCATCTTCCAGATCT
ACCAGTCCCATTGGAGCATCTTTGGGGACTACCTCTCCCTCACCATACCTCTGTGTACCCCT

Alignment

ORF - retro_mluc_1860 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 75.49 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MNLERVSNE-EKLNLCRKYYLGGFAFLPFLWLVNIFWFFREAFLVPAYTEQSQIKGYVWRSAVGFLFWVI
          .NLE.VSN...KLNLC.KY.LGGFAFLPF.WLVNIFWFF.EAFLVPAYTEQSQ.KGYV...AV.FLFWV.
Retrocopy VNLEWVSNN<LKLNLCQKYCLGGFAFLPFPWLVNIFWFF*EAFLVPAYTEQSQTKGYVLHLAVDFLFWVT

Parental  ILTTWITIFQIYRPRWGALGDYLSFTIPLGTP
          .L.TWITIFQIY...W...GDYLS.TIPL.TP
Retrocopy VLHTWITIFQIYQSHWSIFGDYLSLTIPLCTP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1860 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Erinaceus europaeus	ENSEEUG00000002930	1 retrocopy	retro_eeur_7,
Macropus eugenii	ENSMEUG00000012358	1 retrocopy	retro_meug_524,
Myotis lucifugus	ENSMLUG00000011528	2 retrocopies	retro_mluc_1385, retro_mluc_1860 ,
Mus musculus	ENSMUSG00000036835	2 retrocopies	retro_mmus_1415, retro_mmus_2454,
Sorex araneus	ENSSARG00000002056	1 retrocopy	retro_sara_708,
Sus scrofa	ENSSSCG00000024330	1 retrocopy	retro_sscr_664,
Tupaia belangeri	ENSTBEG00000001589	1 retrocopy	retro_tbel_447,