RetrogeneDB ID: retro_meug_524

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold131109:5828..6032(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000012358
• Aliases: None
• Description: None

Sequence

>retro_meug_524
ATGAACCTGGAGCGGGTGTCCAATGAGGAGCAGCTGGACCTCTGCCAGAAGTACTACCTAGGCGGATTTGCCCTCCTTCC
CTTTCTCTGGCTGGTCAATGTTCTGTGGTTCTTCCGAGAGGCCTTCCTGGCCCTTGCCTACGAGGAGCAGGGACAGATCA
AAGGCTGTGTCTGGCTCGTGGTGCTGACCTCCTGGATCACCGTC

Alignment

ORF - retro_meug_524 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 80.0 %
• Parental protein coverage: 69.31 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MNLERVSNEEKLNLCRKYYLGGFALLPFLWLVNVLWFFREAFLAPAYEEQGQIKGYVWRSALGLVFWLVV
          MNLERVSNEE.L.LC.KYYLGGFALLPFLWLVNVLWFFREAFLA.AYEEQGQIKG.VW.....L..W..V
Retrocopy MNLERVSNEEQLDLCQKYYLGGFALLPFLWLVNVLWFFREAFLALAYEEQGQIKGCVW--LVVLTSWITV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_524 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_524 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Erinaceus europaeus	ENSEEUG00000002930	1 retrocopy	retro_eeur_7,
Macropus eugenii	ENSMEUG00000012358	1 retrocopy	retro_meug_524 ,
Myotis lucifugus	ENSMLUG00000011528	2 retrocopies	retro_mluc_1385, retro_mluc_1860,
Mus musculus	ENSMUSG00000036835	2 retrocopies	retro_mmus_1415, retro_mmus_2454,
Sorex araneus	ENSSARG00000002056	1 retrocopy	retro_sara_708,
Sus scrofa	ENSSSCG00000024330	1 retrocopy	retro_sscr_664,
Tupaia belangeri	ENSTBEG00000001589	1 retrocopy	retro_tbel_447,