RetrogeneDB ID: retro_ogar_710

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873526.1:21128681..21129046(+)
• Located in intron of: ENSOGAG00000012239

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: RAB14
• Ensembl ID: ENSOGAG00000012973
• Aliases: None
• Description: RAB14, member RAS oncogene family [Source:HGNC Symbol;Acc:16524]

Sequence

>retro_ogar_710
GTCACTAGAAGAAGTACATATAACCACTTAAGCAGCTGGTTGACAGATGCAAGGAATCTCACCAGTCCAAATACTGTAAT
AATTCTCATAGGAAATAAGGCAGATTTGGCAGCACAGAGAGATGTTACCTAGGAAGAAGCCAAACGGTTTGTTGAAGAAA
ATGGTTTATTGTTCCTTGAAGCAAGTGCAAAAATGGGAGAGAATATACAAGATGGGTTCCTTGAGGTTGCCAAGAAAATC
TATCAGCACATTCAGGATGGAAGCCTGGATCTGAAAGCTGCTGAGTCTGGTGTACAACACAGACCCTCAGCCCCGCAGGG
AGGCCGGCTAACCAGTAAACCCCACCCCAGAGAGAAGGCTGTGGC

Alignment

ORF - retro_ogar_710 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 81.3 %
• Parental protein coverage: 56.74 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  ITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGGFMLKVNIKMGENVE
          .TRRSTYNHLSSWLTDARNLT.PNTVIILIGNKADL.AQRDVT.EEAK.F.EENG...L....KMGEN..
Retrocopy VTRRSTYNHLSSWLTDARNLTSPNTVIILIGNKADLAAQRDVT*EEAKRFVEENGLLFLEASAKMGENIQ

Parental  DAFLEAAKKIYQNIQDGSLDLNAAESGVQHKPSAPQGGRLTSEPQ-PQREGCG
          D.FLE.AKKIYQ.IQDGSLDL.AAESGVQH.PSAPQGGRLTS.P..PQREGCG
Retrocopy DGFLEVAKKIYQHIQDGSLDLKAAESGVQHRPSAPQGGRLTSKPH<PQREGCG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_710 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 8 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000003669	1 retrocopy	retro_chof_2175,
Cavia porcellus	ENSCPOG00000006688	1 retrocopy	retro_cpor_1081,
Myotis lucifugus	ENSMLUG00000009818	1 retrocopy	retro_mluc_1875,
Oryctolagus cuniculus	ENSOCUG00000013654	1 retrocopy	retro_ocun_1667,
Otolemur garnettii	ENSOGAG00000003227	1 retrocopy	retro_ogar_2405,
Otolemur garnettii	ENSOGAG00000012973	1 retrocopy	retro_ogar_710 ,
Pelodiscus sinensis	ENSPSIG00000003919	1 retrocopy	retro_psin_66,
Sarcophilus harrisii	ENSSHAG00000017800	1 retrocopy	retro_shar_80,