RetrogeneDB ID: retro_ogar_2736

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873656.1:4379912..4380226(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000000144
• Aliases: None
• Description: None

Sequence

>retro_ogar_2736
CAGGACAAAGAGAAAGAAAAGAAAGTCCATAATATTAATTTTGGACTTGTCCAAGTTCATCGACAAGATGATCCGCGTGA
AGTTCCAGGGCGGTGGCGGAGCCAGGGGAATCCCGAAAGGGTTTTCAATTCACTCCTCAGCCTTGTGCTCGGTGGGACCA
CTGAATACATGAGAGACCCTGAGGACCAGTGCAAGCTCCCGGCGGAATCGCGCCAGCTGGGCCTGCTGGTGTGCGGGGCA
CGTCGGAGGTGCCCATCTGCCCGGGGGGCGGCATGGAAGCCATTCCCCGCCCCTTAGTCCAGCAGCACAATAGC

Alignment

ORF - retro_ogar_2736 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 63.89 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  QDKEK-KKKESIL--DLSKYIDKTIRVKFQ-GG-REASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTE
          QDKEK.K.K..IL..DLSK.IDK.IRVKFQ.GG.R........F..LL.LVL.GT.EYMRDP.DQ.KL..
Retrocopy QDKEK>KRKSIILILDLSKFIDKMIRVKFQGGG<RSQGNPERVFNSLLSLVLGGTTEYMRDPEDQCKLPA

Parental  DTRQLGLVVC-RGTSVVLICPQDGMEAIPNPFVQQHDA
          ..RQLGL.VC.RGTS.V.ICP..GMEAIP.P.VQQH..
Retrocopy ESRQLGLLVC<RGTSEVPICPGGGMEAIPRPLVQQHNS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_2736 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000013097	1 retrocopy	retro_mluc_331,
Mus musculus	ENSMUSG00000035215	1 retrocopy	retro_mmus_160,
Otolemur garnettii	ENSOGAG00000000144	3 retrocopies	retro_ogar_107, retro_ogar_2736 , retro_ogar_2867,
Rattus norvegicus	ENSRNOG00000019552	1 retrocopy	retro_rnor_1403,